RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 RNF167Q9H6Y7 350 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 TREX1Q9NSU2 369 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 RGS17Q9UGC6 210 aaPredicted RBP4.82□□□□□ -1.64
SYNE2-223ENST00000557005 LOXHD1Q8IVV2 1947 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 TRAV19A0A0A6YYK7 116 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 LCHNA4D1U4 455 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 PITPNM1O00562 1244 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 GNB5O14775 395 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 SCAMP2O15127 329 aaKnown RBP4.82□□□□□ -1.64
SYNE2-223ENST00000557005 CCL16O15467 120 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 JRKO75564 520 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 CPN2P22792 545 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 ACSL1P33121 698 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 ADRA1AP35348 466 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 RPS24P62847 133 aaKnown RBP4.82□□□□□ -1.64
SYNE2-223ENST00000557005 MAP4K2Q12851 820 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 GNA13Q14344 377 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 CCL14Q16627 93 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 BCL7AQ4VC05 210 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 AGAP7PQ5VUJ5 663 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 TAPT1Q6NXT6 567 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 SLITRK4Q8IW52 837 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 FAM20CQ8IXL6 584 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 CFAP206Q8IYR0 622 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 BEND7Q8N7W2 519 aaPredicted RBP4.82□□□□□ -1.64
SYNE2-223ENST00000557005 RELTQ969Z4 430 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 PIP5K1AQ99755 562 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 TMEM121BQ9BXQ6 578 aaPredicted RBP4.82□□□□□ -1.64
SYNE2-223ENST00000557005 RBPJLQ9UBG7 517 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 GPR45Q9Y5Y3 372 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 PGRMC2O15173 223 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 CNMDO75829 334 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 CATP04040 527 aaKnown RBP4.82□□□□□ -1.64
SYNE2-223ENST00000557005 EBLN1P0CF75 366 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 ANXA8P13928 327 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 GABRB3P28472 473 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 CA5AP35218 305 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 LRRC66Q68CR7 880 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 ANKRD34AQ69YU3 496 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 DEFB132Q7Z7B7 95 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 JAZF1Q86VZ6 243 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 RNF175Q8N4F7 328 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 C9orf43Q8TAL5 461 aaPredicted RBP4.82□□□□□ -1.64
SYNE2-223ENST00000557005 RPL3LQ92901 407 aaKnown RBP4.82□□□□□ -1.64
SYNE2-223ENST00000557005 SMIM14Q96QK8 99 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 SLC29A3Q9BZD2 475 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 MAGEH1Q9H213 219 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 TNFRSF12AQ9NP84 129 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 COMMD9Q9P000 198 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 VPS29Q9UBQ0 182 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 TRPS1Q9UHF7 1281 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 PHIPQ8WWQ0 1821 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 A0A0G2JN53 185 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 A0A1W2PRB8 838 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 PLD2O14939 933 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 RGS9O75916 674 aaPredicted RBP4.82□□□□□ -1.64
SYNE2-223ENST00000557005 ALPLP05186 524 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 ALPPP05187 535 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 RYKP34925 604 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 CCR4P51679 360 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 PPIGQ13427 754 aaKnown RBP eCLIP4.82□□□□□ -1.64
SYNE2-223ENST00000557005 COL9A2Q14055 689 aaPredicted RBP4.82□□□□□ -1.64
SYNE2-223ENST00000557005 MPPE1Q53F39 396 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 CARD16Q5EG05 197 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 STEAP3Q658P3 488 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 ADNP2Q6IQ32 1131 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 GDF6Q6KF10 455 aaPredicted RBP4.82□□□□□ -1.64
SYNE2-223ENST00000557005 NXPE1Q8N323 547 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 Q8N402 240 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 ADAMTS16Q8TE57 1224 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 TSEN15Q8WW01 171 aaKnown RBP4.82□□□□□ -1.64
SYNE2-223ENST00000557005 GGHQ92820 318 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 APIPQ96GX9 242 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 DOHHQ9BU89 302 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 FAIM2Q9BWQ8 316 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 BOCQ9BWV1 1114 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 POLR2J3Q9H1A7 115 aaKnown RBP4.82□□□□□ -1.64
SYNE2-223ENST00000557005 OR51I1Q9H343 314 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 KIAA1522Q9P206 1035 aaPredicted RBP4.82□□□□□ -1.64
SYNE2-223ENST00000557005 PHF11Q9UIL8 331 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 ACSL6Q9UKU0 697 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 PADI3Q9ULW8 664 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 SCML2Q9UQR0 700 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 PRSS21Q9Y6M0 314 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 ZNF780BQ9Y6R6 833 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 TCRBV5S2A0A599 114 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 HAPLN1P10915 354 aaPredicted RBP4.82□□□□□ -1.64
SYNE2-223ENST00000557005 PRPS1L1P21108 318 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 EVI2BP34910 448 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 TGFBR2P37173 567 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 MAGEA12P43365 314 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 CAPZA2P47755 286 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 CCL23P55773 120 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 ZNF280AP59817 542 aaPredicted RBP4.82□□□□□ -1.64
SYNE2-223ENST00000557005 RPS26P62854 115 aaKnown RBP4.82□□□□□ -1.64
SYNE2-223ENST00000557005 VARS2Q5ST30 1063 aaKnown RBP4.82□□□□□ -1.64
SYNE2-223ENST00000557005 GARNL3Q5VVW2 1013 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 ZNF782Q6ZMW2 699 aaPredicted RBP4.82□□□□□ -1.64
SYNE2-223ENST00000557005 RETREG3Q86VR2 466 aa4.82□□□□□ -1.64
SYNE2-223ENST00000557005 NPAS3Q8IXF0 933 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms