RNA–Protein interactions for RNA: ENST00000555904.1

ABCD4-223, Transcript of ATP binding cassette subfamily D member 4, human

TSL 3

Gene ABCD4, Length 582 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCD4-223	ENST00000555904	SRFBP1	Q8NEF9	429 aa	Known RBP	11.94	□□□□□ -0.5
ABCD4-223	ENST00000555904	OR1L3	Q8NH93	324 aa		11.94	□□□□□ -0.5
ABCD4-223	ENST00000555904	NT5C	Q8TCD5	201 aa		11.94	□□□□□ -0.5
ABCD4-223	ENST00000555904	ZNF473	Q8WTR7	871 aa	Known RBP	11.94	□□□□□ -0.5
ABCD4-223	ENST00000555904	SERPINI1	Q99574	410 aa		11.94	□□□□□ -0.5
ABCD4-223	ENST00000555904	CTRC	Q99895	268 aa		11.94	□□□□□ -0.5
ABCD4-223	ENST00000555904	DDA1	Q9BW61	102 aa		11.94	□□□□□ -0.5
ABCD4-223	ENST00000555904	C20orf27	Q9GZN8	174 aa		11.94	□□□□□ -0.5
ABCD4-223	ENST00000555904	REXO4	Q9GZR2	422 aa	Known RBP	11.94	□□□□□ -0.5
ABCD4-223	ENST00000555904	ZNF395	Q9H8N7	513 aa	Predicted RBP	11.94	□□□□□ -0.5
ABCD4-223	ENST00000555904	SLCO1B3	Q9NPD5	702 aa		11.94	□□□□□ -0.5
ABCD4-223	ENST00000555904	TXLNG	Q9NUQ3	528 aa		11.94	□□□□□ -0.5
ABCD4-223	ENST00000555904	RIC8B	Q9NVN3	520 aa		11.94	□□□□□ -0.5
ABCD4-223	ENST00000555904	MARCO	Q9UEW3	520 aa	Predicted RBP	11.94	□□□□□ -0.5
ABCD4-223	ENST00000555904	DNAJC15	Q9Y5T4	150 aa		11.94	□□□□□ -0.5
ABCD4-223	ENST00000555904	GOLGA4	Q13439	2230 aa	Known RBP	11.94	□□□□□ -0.5
ABCD4-223	ENST00000555904	HYKK	A2RU49	373 aa		11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	SLC28A1	O00337	649 aa		11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	HDAC3	O15379	428 aa		11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	HCRTR1	O43613	425 aa		11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	SKAP2	O75563	359 aa	Predicted RBP	11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	TGFB1	P01137	390 aa		11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	STATH	P02808	62 aa		11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	TROVE2	P10155	538 aa	Known RBP eCLIP	11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	FGF5	P12034	268 aa		11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	ITIH1	P19827	911 aa		11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	SERPINB3	P29508	390 aa		11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	RBMS1	P29558	406 aa	Known RBP	11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	GYS2	P54840	703 aa		11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	EMP3	P54852	163 aa		11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	RPS13	P62277	151 aa	Known RBP	11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	GABRE	P78334	506 aa		11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	CUL3	Q13618	768 aa		11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	ABRAXAS2	Q15018	415 aa		11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	HERC3	Q15034	1050 aa		11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	PDCD2	Q16342	344 aa	Predicted RBP	11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	MUM1	Q2TAK8	710 aa		11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	HKDC1	Q2TB90	917 aa		11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	LARP7	Q4G0J3	582 aa	Known RBP eCLIP	11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	TOR1AIP1	Q5JTV8	583 aa		11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	SPDYA	Q5MJ70	313 aa		11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	TCHHL1	Q5QJ38	904 aa	Predicted RBP	11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	GARNL3	Q5VVW2	1013 aa		11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	KHDRBS2	Q5VWX1	349 aa	Known RBP	11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	ADNP2	Q6IQ32	1131 aa		11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	DGLUCY	Q7Z3D6	616 aa		11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	BMPER	Q8N8U9	685 aa		11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	ZCCHC10	Q8TBK6	192 aa		11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	CREB3L4	Q8TEY5	395 aa		11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	USP7	Q93009	1102 aa		11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	TM4SF19	Q96DZ7	209 aa		11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	C19orf60	Q96EN9	201 aa		11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	PRR11	Q96HE9	360 aa	Predicted RBP	11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	ZNF285	Q96NJ3	590 aa		11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	KCNC2	Q96PR1	638 aa		11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	TAAR9	Q96RI9	348 aa		11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	HBEGF	Q99075	208 aa		11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	MS4A8	Q9BY19	250 aa		11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	ULBP3	Q9BZM4	244 aa		11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	SPRTN	Q9H040	489 aa	Predicted RBP	11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	NSRP1	Q9H0G5	558 aa	Known RBP	11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	COPS7B	Q9H9Q2	264 aa	Predicted RBP	11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	POLR1B	Q9H9Y6	1135 aa		11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	TNFRSF12A	Q9NP84	129 aa		11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	FARSB	Q9NSD9	589 aa	Known RBP	11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	STARD5	Q9NSY2	213 aa		11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	PNPO	Q9NVS9	261 aa		11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	PSD3	Q9NYI0	1048 aa		11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	AHSP	Q9NZD4	102 aa		11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	VPS29	Q9UBQ0	182 aa		11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	PPT2	Q9UMR5	302 aa		11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	SLC12A4	Q9UP95	1085 aa		11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	RUVBL1	Q9Y265	456 aa	Known RBP	11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	PCDHGA8	Q9Y5G5	932 aa		11.93	□□□□□ -0.5
ABCD4-223	ENST00000555904	FITM1	A5D6W6	292 aa		11.92	□□□□□ -0.5
ABCD4-223	ENST00000555904	LRIT2	A6NDA9	550 aa		11.92	□□□□□ -0.5
ABCD4-223	ENST00000555904	PIP5K1B	O14986	540 aa		11.92	□□□□□ -0.5
ABCD4-223	ENST00000555904	P2RX6	O15547	441 aa		11.92	□□□□□ -0.5
ABCD4-223	ENST00000555904	ZNF749	O43361	778 aa		11.92	□□□□□ -0.5
ABCD4-223	ENST00000555904	ERI3	O43414	337 aa	Known RBP	11.92	□□□□□ -0.5
ABCD4-223	ENST00000555904	HYAL3	O43820	417 aa	Predicted RBP	11.92	□□□□□ -0.5
ABCD4-223	ENST00000555904	EDF1	O60869	148 aa	Known RBP	11.92	□□□□□ -0.5
ABCD4-223	ENST00000555904	CPNE3	O75131	537 aa	Known RBP	11.92	□□□□□ -0.5
ABCD4-223	ENST00000555904	SEMA3D	O95025	777 aa		11.92	□□□□□ -0.5
ABCD4-223	ENST00000555904	LINC00032	P0C843	101 aa		11.92	□□□□□ -0.5
ABCD4-223	ENST00000555904	HTR6	P50406	440 aa		11.92	□□□□□ -0.5
ABCD4-223	ENST00000555904	GNGT1	P63211	74 aa		11.92	□□□□□ -0.5
ABCD4-223	ENST00000555904	NR6A1	Q15406	480 aa		11.92	□□□□□ -0.5
ABCD4-223	ENST00000555904	PRTG	Q2VWP7	1150 aa		11.92	□□□□□ -0.5
ABCD4-223	ENST00000555904	TMEM214	Q6NUQ4	689 aa	Known RBP	11.92	□□□□□ -0.5
ABCD4-223	ENST00000555904	RNF165	Q6ZSG1	346 aa		11.92	□□□□□ -0.5
ABCD4-223	ENST00000555904	TRIM46	Q7Z4K8	759 aa		11.92	□□□□□ -0.5
ABCD4-223	ENST00000555904	VN1R5	Q7Z5H4	357 aa		11.92	□□□□□ -0.5
ABCD4-223	ENST00000555904	KCT2	Q8NC54	265 aa		11.92	□□□□□ -0.5
ABCD4-223	ENST00000555904	OR2L5	Q8NG80	312 aa		11.92	□□□□□ -0.5
ABCD4-223	ENST00000555904	GAL3ST3	Q96A11	431 aa		11.92	□□□□□ -0.5
ABCD4-223	ENST00000555904	RGMA	Q96B86	450 aa		11.92	□□□□□ -0.5
ABCD4-223	ENST00000555904	CLIP3	Q96DZ5	547 aa		11.92	□□□□□ -0.5
ABCD4-223	ENST00000555904	CHMP6	Q96FZ7	201 aa		11.92	□□□□□ -0.5
ABCD4-223	ENST00000555904	MACROD1	Q9BQ69	325 aa		11.92	□□□□□ -0.5

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