RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 CACNA2D3Q8IZS8 1091 aa13.86□□□□□ -0.19
SHMT2-210ENST00000553950 CSNK1A1LQ8N752 337 aa13.86□□□□□ -0.19
SHMT2-210ENST00000553950 ANKRD53Q8N9V6 530 aa13.86□□□□□ -0.19
SHMT2-210ENST00000553950 TTC29Q8NA56 475 aaPredicted RBP13.86□□□□□ -0.19
SHMT2-210ENST00000553950 CCDC197Q8NCU1 140 aa13.86□□□□□ -0.19
SHMT2-210ENST00000553950 RFWD2Q8NHY2 731 aa13.86□□□□□ -0.19
SHMT2-210ENST00000553950 SLC13A3Q8WWT9 602 aa13.86□□□□□ -0.19
SHMT2-210ENST00000553950 GAL3ST3Q96A11 431 aa13.86□□□□□ -0.19
SHMT2-210ENST00000553950 KCNC2Q96PR1 638 aa13.86□□□□□ -0.19
SHMT2-210ENST00000553950 DEPDC7Q96QD5 511 aa13.86□□□□□ -0.19
SHMT2-210ENST00000553950 OR2A5Q96R48 311 aa13.86□□□□□ -0.19
SHMT2-210ENST00000553950 LRTM1Q9HBL6 345 aa13.86□□□□□ -0.19
SHMT2-210ENST00000553950 ENAMQ9NRM1 1142 aa13.86□□□□□ -0.19
SHMT2-210ENST00000553950 KLHL20Q9Y2M5 609 aa13.86□□□□□ -0.19
SHMT2-210ENST00000553950 DMDP11532 3685 aa13.86□□□□□ -0.19
SHMT2-210ENST00000553950 LSM1O15116 133 aaKnown RBP13.85□□□□□ -0.19
SHMT2-210ENST00000553950 KIF1CO43896 1103 aaKnown RBP13.85□□□□□ -0.19
SHMT2-210ENST00000553950 SERPIND1P05546 499 aa13.85□□□□□ -0.19
SHMT2-210ENST00000553950 PRR35P0CG20 571 aa13.85□□□□□ -0.19
SHMT2-210ENST00000553950 EPHA3P29320 983 aa13.85□□□□□ -0.19
SHMT2-210ENST00000553950 CSTF2P33240 577 aaKnown RBP eCLIP13.85□□□□□ -0.19
SHMT2-210ENST00000553950 IDH3AP50213 366 aa13.85□□□□□ -0.19
SHMT2-210ENST00000553950 STX1BP61266 288 aa13.85□□□□□ -0.19
SHMT2-210ENST00000553950 GABPB1Q06547 395 aaPredicted RBP13.85□□□□□ -0.19
SHMT2-210ENST00000553950 ZIC1Q15915 447 aa13.85□□□□□ -0.19
SHMT2-210ENST00000553950 ADPRMQ3LIE5 342 aa13.85□□□□□ -0.19
SHMT2-210ENST00000553950 YOD1Q5VVQ6 348 aaPredicted RBP13.85□□□□□ -0.19
SHMT2-210ENST00000553950 MAVSQ7Z434 540 aa13.85□□□□□ -0.19
SHMT2-210ENST00000553950 NUDT13Q86X67 352 aa13.85□□□□□ -0.19
SHMT2-210ENST00000553950 PLD3Q8IV08 490 aa13.85□□□□□ -0.19
SHMT2-210ENST00000553950 GPR135Q8IZ08 494 aa13.85□□□□□ -0.19
SHMT2-210ENST00000553950 DNAJC22Q8N4W6 341 aa13.85□□□□□ -0.19
SHMT2-210ENST00000553950 FNDC5Q8NAU1 212 aa13.85□□□□□ -0.19
SHMT2-210ENST00000553950 AGBL5Q8NDL9 886 aa13.85□□□□□ -0.19
SHMT2-210ENST00000553950 CREB3L4Q8TEY5 395 aa13.85□□□□□ -0.19
SHMT2-210ENST00000553950 RGMAQ96B86 450 aa13.85□□□□□ -0.19
SHMT2-210ENST00000553950 PPM1MQ96MI6 270 aa13.85□□□□□ -0.19
SHMT2-210ENST00000553950 HBEGFQ99075 208 aa13.85□□□□□ -0.19
SHMT2-210ENST00000553950 SLC6A16Q9GZN6 736 aa13.85□□□□□ -0.19
SHMT2-210ENST00000553950 REXO4Q9GZR2 422 aaKnown RBP13.85□□□□□ -0.19
SHMT2-210ENST00000553950 KLHL25Q9H0H3 589 aa13.85□□□□□ -0.19
SHMT2-210ENST00000553950 COPS7BQ9H9Q2 264 aaPredicted RBP13.85□□□□□ -0.19
SHMT2-210ENST00000553950 FARSBQ9NSD9 589 aaKnown RBP13.85□□□□□ -0.19
SHMT2-210ENST00000553950 IRAK4Q9NWZ3 460 aa13.85□□□□□ -0.19
SHMT2-210ENST00000553950 ASIC5Q9NY37 505 aa13.85□□□□□ -0.19
SHMT2-210ENST00000553950 NOP53Q9NZM5 478 aaKnown RBP13.85□□□□□ -0.19
SHMT2-210ENST00000553950 TMEM9Q9P0T7 183 aa13.85□□□□□ -0.19
SHMT2-210ENST00000553950 ADAM29Q9UKF5 820 aa13.85□□□□□ -0.19
SHMT2-210ENST00000553950 MAPRE3Q9UPY8 281 aa13.85□□□□□ -0.19
SHMT2-210ENST00000553950 RUVBL1Q9Y265 456 aaKnown RBP13.85□□□□□ -0.19
SHMT2-210ENST00000553950 RIF1Q5UIP0 2472 aaKnown RBP13.84□□□□□ -0.19
SHMT2-210ENST00000553950 ARHGAP10A1A4S6 786 aa13.84□□□□□ -0.19
SHMT2-210ENST00000553950 H0YGG7 62 aa13.84□□□□□ -0.19
SHMT2-210ENST00000553950 SLC30A4O14863 429 aa13.84□□□□□ -0.19
SHMT2-210ENST00000553950 CCDC22O60826 627 aa13.84□□□□□ -0.19
SHMT2-210ENST00000553950 JUNP05412 331 aaKnown RBP13.84□□□□□ -0.19
SHMT2-210ENST00000553950 CEACAM1P13688 526 aa13.84□□□□□ -0.19
SHMT2-210ENST00000553950 HOXB3P14651 431 aaPredicted RBP13.84□□□□□ -0.19
SHMT2-210ENST00000553950 IDO1P14902 403 aa13.84□□□□□ -0.19
SHMT2-210ENST00000553950 SEPHS1P49903 392 aa13.84□□□□□ -0.19
SHMT2-210ENST00000553950 NEK2P51955 445 aa13.84□□□□□ -0.19
SHMT2-210ENST00000553950 ITGA1P56199 1179 aa13.84□□□□□ -0.19
SHMT2-210ENST00000553950 ARF3P61204 181 aaPredicted RBP13.84□□□□□ -0.19
SHMT2-210ENST00000553950 RPL38P63173 70 aaKnown RBP13.84□□□□□ -0.19
SHMT2-210ENST00000553950 ZFP36L1Q07352 338 aaKnown RBP13.84□□□□□ -0.19
SHMT2-210ENST00000553950 EIF3IQ13347 325 aaKnown RBP13.84□□□□□ -0.19
SHMT2-210ENST00000553950 TUBB3Q13509 450 aa13.84□□□□□ -0.19
SHMT2-210ENST00000553950 GRM7Q14831 915 aa13.84□□□□□ -0.19
SHMT2-210ENST00000553950 HERC3Q15034 1050 aa13.84□□□□□ -0.19
SHMT2-210ENST00000553950 GSTA3Q16772 222 aa13.84□□□□□ -0.19
SHMT2-210ENST00000553950 SLC9B1Q4ZJI4 515 aa13.84□□□□□ -0.19
SHMT2-210ENST00000553950 DEPDC1Q5TB30 811 aa13.84□□□□□ -0.19
SHMT2-210ENST00000553950 FBXO42Q6P3S6 717 aa13.84□□□□□ -0.19
SHMT2-210ENST00000553950 TLDC1Q6P9B6 456 aa13.84□□□□□ -0.19
SHMT2-210ENST00000553950 VN1R5Q7Z5H4 357 aa13.84□□□□□ -0.19
SHMT2-210ENST00000553950 VN1R4Q7Z5H5 301 aa13.84□□□□□ -0.19
SHMT2-210ENST00000553950 MCATQ8IVS2 390 aaKnown RBP13.84□□□□□ -0.19
SHMT2-210ENST00000553950 DEFB124Q8NES8 71 aa13.84□□□□□ -0.19
SHMT2-210ENST00000553950 OR2L5Q8NG80 312 aa13.84□□□□□ -0.19
SHMT2-210ENST00000553950 STARD8Q92502 1023 aa13.84□□□□□ -0.19
SHMT2-210ENST00000553950 MTFMTQ96DP5 389 aaKnown RBP13.84□□□□□ -0.19
SHMT2-210ENST00000553950 TM4SF19Q96DZ7 209 aa13.84□□□□□ -0.19
SHMT2-210ENST00000553950 THOC1Q96FV9 657 aaKnown RBP13.84□□□□□ -0.19
SHMT2-210ENST00000553950 PPP1R36Q96LQ0 422 aa13.84□□□□□ -0.19
SHMT2-210ENST00000553950 ZNF285Q96NJ3 590 aa13.84□□□□□ -0.19
SHMT2-210ENST00000553950 PHOX2BQ99453 314 aa13.84□□□□□ -0.19
SHMT2-210ENST00000553950 SIRT5Q9NXA8 310 aa13.84□□□□□ -0.19
SHMT2-210ENST00000553950 SERTAD3Q9UJW9 196 aa13.84□□□□□ -0.19
SHMT2-210ENST00000553950 SRPK3Q9UPE1 567 aa13.84□□□□□ -0.19
SHMT2-210ENST00000553950 EIF3LQ9Y262 564 aaKnown RBP13.84□□□□□ -0.19
SHMT2-210ENST00000553950 CCL27Q9Y4X3 112 aa13.84□□□□□ -0.19
SHMT2-210ENST00000553950 ATP6AP2A0A1C7CYW4 349 aa13.83□□□□□ -0.2
SHMT2-210ENST00000553950 LRIT2A6NDA9 550 aa13.83□□□□□ -0.2
SHMT2-210ENST00000553950 UBDO15205 165 aa13.83□□□□□ -0.2
SHMT2-210ENST00000553950 LCMT2O60294 686 aaKnown RBP13.83□□□□□ -0.2
SHMT2-210ENST00000553950 NRP2O60462 931 aa13.83□□□□□ -0.2
SHMT2-210ENST00000553950 SEC22BO75396 215 aa13.83□□□□□ -0.2
SHMT2-210ENST00000553950 ATP6AP2O75787 350 aa13.83□□□□□ -0.2
SHMT2-210ENST00000553950 TGFB1P01137 390 aa13.83□□□□□ -0.2
SHMT2-210ENST00000553950 PRPS2P11908 318 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 122.2 ms