RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 YIF1BQ5BJH7 314 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 ZNF438Q7Z4V0 828 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 VN1R5Q7Z5H4 357 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 GALNT5Q7Z7M9 940 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 GLRX5Q86SX6 157 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 VRK3Q8IV63 474 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 LIX1Q8N485 282 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 CHST14Q8NCH0 376 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 CLHC1Q8NHS4 586 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 MRPS31Q92665 395 aaKnown RBP11.82□□□□□ -0.52
SHMT2-207ENST00000553837 GTF2H4Q92759 462 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 SCRN2Q96FV2 425 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 ITCHQ96J02 903 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 RIBC2Q9H4K1 309 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 HCFC1R1Q9NWW0 138 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 TAS2R9Q9NYW1 312 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 SLC25A37Q9NYZ2 338 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 NUP50Q9UKX7 468 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 ZNF490Q9ULM2 529 aaPredicted RBP11.82□□□□□ -0.52
SHMT2-207ENST00000553837 CFL2Q9Y281 166 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 INVSQ9Y283 1065 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 LTBP2Q14767 1821 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 DSCR3O14972 297 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 MITFO75030 526 aaPredicted RBP11.82□□□□□ -0.52
SHMT2-207ENST00000553837 SEMA3DO95025 777 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 B3GALT4O96024 378 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 GSTM1P09488 218 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 C1SP09871 688 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 CCL5P13501 91 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 PRKACAP17612 351 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 EFNA1P20827 205 aaPredicted RBP11.82□□□□□ -0.52
SHMT2-207ENST00000553837 SLC15A1P46059 708 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 ARHGDIAP52565 204 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 GPR50Q13585 617 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 ARHGEF7Q14155 803 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 FAM174BQ3ZCQ3 159 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 SPANXN4Q5MJ08 99 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 MPP7Q5T2T1 576 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 C22orf39Q6P5X5 142 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 SHQ1Q6PI26 577 aaKnown RBP11.82□□□□□ -0.52
SHMT2-207ENST00000553837 DPY19L3Q6ZPD9 716 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 TPRG1Q6ZUI0 275 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 DET1Q7L5Y6 550 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 TRIM46Q7Z4K8 759 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 TSPYL5Q86VY4 417 aaPredicted RBP11.82□□□□□ -0.52
SHMT2-207ENST00000553837 TMEM25Q86YD3 366 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 RAB43Q86YS6 212 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 FAM109AQ8N4B1 249 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 SETD6Q8TBK2 473 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 MARVELD3Q96A59 401 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 TMCO6Q96DC7 493 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 CEP19Q96LK0 163 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 PPP3R2Q96LZ3 170 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 DMRTB1Q96MA1 342 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 GDF15Q99988 308 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 THUMPD3Q9BV44 507 aaKnown RBP11.82□□□□□ -0.52
SHMT2-207ENST00000553837 NTMT1Q9BV86 223 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 ZNF717Q9BY31 904 aaPredicted RBP11.82□□□□□ -0.52
SHMT2-207ENST00000553837 SUV39H2Q9H5I1 410 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 CD84Q9UIB8 345 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 UTS2RQ9UKP6 389 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 BOLA1Q9Y3E2 137 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 LYVE1Q9Y5Y7 322 aa11.82□□□□□ -0.52
SHMT2-207ENST00000553837 ELOVL7A1L3X0 281 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 CXCR6O00574 342 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 PRAMEF4O60810 478 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 ULK1O75385 1050 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 LAG3P18627 525 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 LIPAP38571 399 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 MAPK8P45983 427 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 SYT16Q17RD7 645 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 TBRG1Q3YBR2 411 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 BCL7AQ4VC05 210 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 PRAMEF9Q5VWM5 478 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 LYPLAL1Q5VWZ2 237 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 NXNL2Q5VZ03 156 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 LAIR1Q6GTX8 287 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 ZNF517Q6ZMY9 492 aaPredicted RBP11.81□□□□□ -0.52
SHMT2-207ENST00000553837 NOXA1Q86UR1 476 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 C10orf111Q8N326 155 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 ZNF548Q8NEK5 533 aaPredicted RBP11.81□□□□□ -0.52
SHMT2-207ENST00000553837 SLC13A3Q8WWT9 602 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 USP7Q93009 1102 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 PYCR2Q96C36 320 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 METTL2AQ96IZ6 378 aaKnown RBP11.81□□□□□ -0.52
SHMT2-207ENST00000553837 MCCC1Q96RQ3 725 aaPredicted RBP11.81□□□□□ -0.52
SHMT2-207ENST00000553837 C19orf43Q9BQ61 176 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 TTYH2Q9BSA4 534 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 GON7Q9BXV9 100 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 ACPTQ9BZG2 426 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 ZDHHC6Q9H6R6 413 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 RDH14Q9HBH5 336 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 DCAF13Q9NV06 445 aaKnown RBP11.81□□□□□ -0.52
SHMT2-207ENST00000553837 ZDHHC3Q9NYG2 299 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 TNFRSF10DQ9UBN6 386 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 AASSQ9UDR5 926 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 NOSIPQ9Y314 301 aaKnown RBP11.81□□□□□ -0.52
SHMT2-207ENST00000553837 U3KQV3 271 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 PDE4DIPQ5VU43 2346 aa11.81□□□□□ -0.52
SHMT2-207ENST00000553837 OR5K3A6NET4 321 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms