RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 COPS4Q9BT78 406 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 DCSTAMPQ9H295 470 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 DSN1Q9H410 356 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 SPATA6Q9NWH7 488 aaPredicted RBP7.22□□□□□ -1.25
LIMA1-213ENST00000552720 FAM120CQ9NX05 1096 aaKnown RBP7.22□□□□□ -1.25
LIMA1-213ENST00000552720 GPR83Q9NYM4 423 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 STOX2Q9P2F5 926 aaPredicted RBP7.22□□□□□ -1.25
LIMA1-213ENST00000552720 OSGIN1Q9UJX0 560 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 PAIP2BQ9ULR5 123 aaKnown RBP7.22□□□□□ -1.25
LIMA1-213ENST00000552720 HSPE1-MOB4S4R3N1 261 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 CHD9Q3L8U1 2897 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 A0A0C4DFX4 3053 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 GNG14A0A1W2PPG7 69 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 TRIM43BA6NCK2 446 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 NPIPB8E9PQR5 432 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 TEX28O15482 410 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 AQP9O43315 295 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 SUV39H1O43463 412 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 RFPL2O75678 378 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 ADRA2AP08913 450 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 PDHA2P29803 388 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 CD40LGP29965 261 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 CRATP43155 626 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 SEPHS1P49903 392 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 RPS13P62277 151 aaKnown RBP7.22□□□□□ -1.25
LIMA1-213ENST00000552720 MEF2AQ02078 507 aaPredicted RBP7.22□□□□□ -1.25
LIMA1-213ENST00000552720 SFSWAPQ12872 951 aaKnown RBP7.22□□□□□ -1.25
LIMA1-213ENST00000552720 RAB33AQ14088 237 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 DOC2BQ14184 412 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 COLEC12Q5KU26 742 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 PLEKHS1Q5SXH7 462 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 CPTPQ5TA50 214 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 ERICH5Q6P6B1 374 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 MSANTD1Q6ZTZ1 278 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 PLD3Q8IV08 490 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 NPAS3Q8IXF0 933 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 FAM9CQ8IZT9 166 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 SVOPQ8N4V2 548 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 OR9Q2Q8NGE9 314 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 OR5AK3PQ8NH89 298 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 HUS1BQ8NHY5 278 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 MCFD2Q8NI22 146 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 PHF10Q8WUB8 498 aaKnown RBP7.22□□□□□ -1.25
LIMA1-213ENST00000552720 S100ZQ8WXG8 99 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 CIDECQ96AQ7 238 aaPredicted RBP7.22□□□□□ -1.25
LIMA1-213ENST00000552720 HRASLS5Q96KN8 279 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 LMLNQ96KR4 655 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 ABCB10Q9NRK6 738 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 NDUFAF4Q9P032 175 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 RUVBL1Q9Y265 456 aaKnown RBP7.22□□□□□ -1.25
LIMA1-213ENST00000552720 LYVE1Q9Y5Y7 322 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 A8MU76 341 aa7.21□□□□□ -1.25
LIMA1-213ENST00000552720 E9PQ18 207 aa7.21□□□□□ -1.25
LIMA1-213ENST00000552720 LEFTY2O00292 366 aa7.21□□□□□ -1.25
LIMA1-213ENST00000552720 TNFRSF11BO00300 401 aa7.21□□□□□ -1.25
LIMA1-213ENST00000552720 AIREO43918 545 aa7.21□□□□□ -1.25
LIMA1-213ENST00000552720 STSP08842 583 aa7.21□□□□□ -1.25
LIMA1-213ENST00000552720 DBTP11182 482 aaKnown RBP7.21□□□□□ -1.25
LIMA1-213ENST00000552720 IMPA1P29218 277 aa7.21□□□□□ -1.25
LIMA1-213ENST00000552720 PPP3CCP48454 512 aa7.21□□□□□ -1.25
LIMA1-213ENST00000552720 CLK1P49759 484 aaKnown RBP7.21□□□□□ -1.25
LIMA1-213ENST00000552720 MVDP53602 400 aa7.21□□□□□ -1.25
LIMA1-213ENST00000552720 CDH12P55289 794 aa7.21□□□□□ -1.25
LIMA1-213ENST00000552720 AP1S2P56377 157 aa7.21□□□□□ -1.25
LIMA1-213ENST00000552720 HBA1P69905 142 aa7.21□□□□□ -1.25
LIMA1-213ENST00000552720 CSTF3Q12996 717 aaKnown RBP7.21□□□□□ -1.25
LIMA1-213ENST00000552720 PPIGQ13427 754 aaKnown RBP eCLIP7.21□□□□□ -1.25
LIMA1-213ENST00000552720 VEZF1Q14119 521 aa7.21□□□□□ -1.25
LIMA1-213ENST00000552720 PRSS53Q2L4Q9 553 aa7.21□□□□□ -1.25
LIMA1-213ENST00000552720 LIPJQ5W064 366 aa7.21□□□□□ -1.25
LIMA1-213ENST00000552720 PLEKHG7Q6ZR37 379 aa7.21□□□□□ -1.25
LIMA1-213ENST00000552720 NCCRP1Q6ZVX7 275 aaPredicted RBP7.21□□□□□ -1.25
LIMA1-213ENST00000552720 HTR3DQ70Z44 454 aa7.21□□□□□ -1.25
LIMA1-213ENST00000552720 P3H2Q8IVL5 708 aa7.21□□□□□ -1.25
LIMA1-213ENST00000552720 TCEAL8Q8IYN2 117 aa7.21□□□□□ -1.25
LIMA1-213ENST00000552720 ZNF366Q8N895 744 aa7.21□□□□□ -1.25
LIMA1-213ENST00000552720 PSD4Q8NDX1 1056 aa7.21□□□□□ -1.25
LIMA1-213ENST00000552720 FAM83FQ8NEG4 500 aaPredicted RBP7.21□□□□□ -1.25
LIMA1-213ENST00000552720 OR7G3Q8NG95 312 aa7.21□□□□□ -1.25
LIMA1-213ENST00000552720 OR4A15Q8NGL6 344 aa7.21□□□□□ -1.25
LIMA1-213ENST00000552720 HTRA1Q92743 480 aa7.21□□□□□ -1.25
LIMA1-213ENST00000552720 GGHQ92820 318 aa7.21□□□□□ -1.25
LIMA1-213ENST00000552720 NEIL2Q969S2 332 aa7.21□□□□□ -1.25
LIMA1-213ENST00000552720 C19orf43Q9BQ61 176 aa7.21□□□□□ -1.25
LIMA1-213ENST00000552720 HEPHQ9BQS7 1158 aa7.21□□□□□ -1.25
LIMA1-213ENST00000552720 DOHHQ9BU89 302 aa7.21□□□□□ -1.25
LIMA1-213ENST00000552720 RIOK2Q9BVS4 552 aaKnown RBP7.21□□□□□ -1.25
LIMA1-213ENST00000552720 SLC46A2Q9BY10 475 aa7.21□□□□□ -1.25
LIMA1-213ENST00000552720 ITPAQ9BY32 194 aa7.21□□□□□ -1.25
LIMA1-213ENST00000552720 C6orf62Q9GZU0 229 aaPredicted RBP7.21□□□□□ -1.25
LIMA1-213ENST00000552720 OR51E2Q9H255 320 aa7.21□□□□□ -1.25
LIMA1-213ENST00000552720 TRIM39Q9HCM9 518 aa7.21□□□□□ -1.25
LIMA1-213ENST00000552720 HMX1Q9NP08 348 aaPredicted RBP7.21□□□□□ -1.25
LIMA1-213ENST00000552720 QPCTLQ9NXS2 382 aa7.21□□□□□ -1.25
LIMA1-213ENST00000552720 SCHIP1Q9P0W5 487 aaPredicted RBP7.21□□□□□ -1.25
LIMA1-213ENST00000552720 HS3ST2Q9Y278 367 aa7.21□□□□□ -1.25
LIMA1-213ENST00000552720 PPIL1Q9Y3C6 166 aa7.21□□□□□ -1.25
LIMA1-213ENST00000552720 TCF20Q9UGU0 1960 aaKnown RBP7.21□□□□□ -1.26
LIMA1-213ENST00000552720 MYO10Q9HD67 2058 aa7.21□□□□□ -1.26
LIMA1-213ENST00000552720 LOC100506127A0A0U1RQW1 187 aa7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms