RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 GATA5Q9BWX5 397 aaPredicted RBP3.64□□□□□ -1.83
LIMA1-208ENST00000551691 B3GNT4Q9C0J1 378 aa3.64□□□□□ -1.83
LIMA1-208ENST00000551691 NPFFR1Q9GZQ6 430 aa3.64□□□□□ -1.83
LIMA1-208ENST00000551691 TASP1Q9H6P5 420 aa3.64□□□□□ -1.83
LIMA1-208ENST00000551691 PPP1R3EQ9H7J1 279 aa3.64□□□□□ -1.83
LIMA1-208ENST00000551691 ACSS1Q9NUB1 689 aaPredicted RBP3.64□□□□□ -1.83
LIMA1-208ENST00000551691 CHCHD3Q9NX63 227 aaKnown RBP3.64□□□□□ -1.83
LIMA1-208ENST00000551691 SEPT10Q9P0V9 454 aa3.64□□□□□ -1.83
LIMA1-208ENST00000551691 TLK1Q9UKI8 766 aa3.64□□□□□ -1.83
LIMA1-208ENST00000551691 ITGA11Q9UKX5 1188 aa3.64□□□□□ -1.83
LIMA1-208ENST00000551691 LIPT1Q9Y234 373 aa3.64□□□□□ -1.83
LIMA1-208ENST00000551691 ITM2BQ9Y287 266 aa3.64□□□□□ -1.83
LIMA1-208ENST00000551691 SRPRBQ9Y5M8 271 aaKnown RBP3.64□□□□□ -1.83
LIMA1-208ENST00000551691 COX11Q9Y6N1 276 aa3.64□□□□□ -1.83
LIMA1-208ENST00000551691 MYO18AQ92614 2054 aaKnown RBP3.64□□□□□ -1.83
LIMA1-208ENST00000551691 ANKHD1Q8IWZ3 2542 aaKnown RBP3.64□□□□□ -1.83
LIMA1-208ENST00000551691 A0A0D9SFI3 127 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 A0A1W2PNU3 283 aaPredicted RBP3.63□□□□□ -1.83
LIMA1-208ENST00000551691 A0A1W2PR77 199 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 CCDC188H7C350 402 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 M0QZ24 198 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 IFIT3O14879 490 aaKnown RBP3.63□□□□□ -1.83
LIMA1-208ENST00000551691 FLRT2O43155 660 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 CHMP2AO43633 222 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 LDOC1O95751 146 aaPredicted RBP3.63□□□□□ -1.83
LIMA1-208ENST00000551691 RLN1P04808 185 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 G6PDP11413 515 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 GNSP15586 552 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 PRLRP16471 622 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 ARF4P18085 180 aaPredicted RBP3.63□□□□□ -1.83
LIMA1-208ENST00000551691 PSMA3P25788 255 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 MAPK3P27361 379 aaPredicted RBP3.63□□□□□ -1.83
LIMA1-208ENST00000551691 TNFSF9P41273 254 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 ZNF131P52739 623 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 UCNP55089 124 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 EVCP57679 992 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 STX1BP61266 288 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 RPS13P62277 151 aaKnown RBP3.63□□□□□ -1.83
LIMA1-208ENST00000551691 LAMTOR4Q0VGL1 99 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 TYSND1Q2T9J0 566 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 ZC2HC1CQ53FD0 456 aaPredicted RBP3.63□□□□□ -1.83
LIMA1-208ENST00000551691 SGO1Q5FBB7 561 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 DCST1Q5T197 706 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 CASC4Q6P4E1 433 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 SLC36A4Q6YBV0 504 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 ZNF813Q6ZN06 617 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 LINC00696Q6ZRV3 163 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 TRILQ7L0X0 811 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 PHLDB2Q86SQ0 1253 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 TMEM150AQ86TG1 271 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 TSPAN33Q86UF1 283 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 ZNF410Q86VK4 478 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 EFCAB13Q8IY85 973 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 CMTM8Q8IZV2 173 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 CLYBLQ8N0X4 340 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 GALNT16Q8N428 558 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 SPATA6LQ8N4H0 392 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 EID2Q8N6I1 236 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 NHLRC2Q8NBF2 726 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 RNF149Q8NC42 400 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 CNNM3Q8NE01 707 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 FIBINQ8TAL6 211 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 TRAF3IP1Q8TDR0 691 aaPredicted RBP3.63□□□□□ -1.83
LIMA1-208ENST00000551691 PTP4A1Q93096 173 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 SPSB1Q96BD6 273 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 REPS1Q96D71 796 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 STAMBPL1Q96FJ0 436 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 SFXN2Q96NB2 322 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 SLC22A12Q96S37 553 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 ZNF577Q9BSK1 485 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 INPP5KQ9BT40 448 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 FNDC11Q9BVV2 318 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 GPR174Q9BXC1 333 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 TRIM6Q9C030 488 aaPredicted RBP3.63□□□□□ -1.83
LIMA1-208ENST00000551691 ABCG8Q9H221 673 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 TNMDQ9H2S6 317 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 FAM124BQ9H5Z6 455 aaPredicted RBP3.63□□□□□ -1.83
LIMA1-208ENST00000551691 MID1IP1Q9NPA3 183 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 DUS2Q9NX74 493 aaKnown RBP3.63□□□□□ -1.83
LIMA1-208ENST00000551691 FOXJ2Q9P0K8 574 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 VPS18Q9P253 973 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 TRPC4Q9UBN4 977 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 CHKBQ9Y259 395 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 WBP11Q9Y2W2 641 aaKnown RBP3.63□□□□□ -1.83
LIMA1-208ENST00000551691 YIPF1Q9Y548 306 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 STON1Q9Y6Q2 735 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 KIAA1549LQ6ZVL6 1849 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 DOCK9Q9BZ29 2069 aa3.63□□□□□ -1.83
LIMA1-208ENST00000551691 TMEM131Q92545 1883 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 IGLV3-22A0A075B6J6 115 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 KIR2DS5A0A0G2JLQ3 304 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 KRT87PA6NCN2 255 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 OOEPA6NGQ2 149 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 CGB1A6NKQ9 187 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 WASH3PC4AMC7 463 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 KIR2DS3K7RE56 304 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 CPLX1O14810 134 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 MGST3O14880 152 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 NDUFS4O43181 175 aa3.62□□□□□ -1.83
LIMA1-208ENST00000551691 ITM2AO43736 263 aa3.62□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms