RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 KCNC1P48547 511 aa13.63□□□□□ -0.23
USP3-204ENST00000540797 PDX1P52945 283 aa13.63□□□□□ -0.23
USP3-204ENST00000540797 MTTPP55157 894 aa13.63□□□□□ -0.23
USP3-204ENST00000540797 PPP3R1P63098 170 aa13.63□□□□□ -0.23
USP3-204ENST00000540797 SLC7A9P82251 487 aa13.63□□□□□ -0.23
USP3-204ENST00000540797 DSC3Q14574 896 aa13.63□□□□□ -0.23
USP3-204ENST00000540797 ZNF630Q2M218 657 aaPredicted RBP13.63□□□□□ -0.23
USP3-204ENST00000540797 DEFB134Q4QY38 66 aa13.63□□□□□ -0.23
USP3-204ENST00000540797 KIAA0319Q5VV43 1072 aa13.63□□□□□ -0.23
USP3-204ENST00000540797 CSNK1A1LQ8N752 337 aa13.63□□□□□ -0.23
USP3-204ENST00000540797 OR9I1Q8NGQ6 314 aa13.63□□□□□ -0.23
USP3-204ENST00000540797 KCNC2Q96PR1 638 aa13.63□□□□□ -0.23
USP3-204ENST00000540797 TMEM138Q9NPI0 162 aa13.63□□□□□ -0.23
USP3-204ENST00000540797 GIMAP2Q9UG22 337 aa13.63□□□□□ -0.23
USP3-204ENST00000540797 A0A1W2PP18 115 aa13.63□□□□□ -0.23
USP3-204ENST00000540797 SLC30A4O14863 429 aa13.63□□□□□ -0.23
USP3-204ENST00000540797 AKAP8O43823 692 aaKnown RBP13.63□□□□□ -0.23
USP3-204ENST00000540797 IDH3BO43837 385 aa13.63□□□□□ -0.23
USP3-204ENST00000540797 NFE2L1Q14494 772 aa13.63□□□□□ -0.23
USP3-204ENST00000540797 TLR1Q15399 786 aa13.63□□□□□ -0.23
USP3-204ENST00000540797 TMEM44Q2T9K0 475 aa13.63□□□□□ -0.23
USP3-204ENST00000540797 HNRNPA1L2Q32P51 320 aaKnown RBP13.63□□□□□ -0.23
USP3-204ENST00000540797 TECRLQ5HYJ1 363 aa13.63□□□□□ -0.23
USP3-204ENST00000540797 TAS2R9Q9NYW1 312 aa13.63□□□□□ -0.23
USP3-204ENST00000540797 DKKL1Q9UK85 242 aa13.63□□□□□ -0.23
USP3-204ENST00000540797 UBE2QL1A1L167 161 aa13.63□□□□□ -0.23
USP3-204ENST00000540797 RFPL1O75677 317 aa13.63□□□□□ -0.23
USP3-204ENST00000540797 PRKD3O94806 890 aa13.63□□□□□ -0.23
USP3-204ENST00000540797 SLC6A4P31645 630 aa13.63□□□□□ -0.23
USP3-204ENST00000540797 PXNP49023 591 aaPredicted RBP13.63□□□□□ -0.23
USP3-204ENST00000540797 CDKN2DP55273 166 aa13.63□□□□□ -0.23
USP3-204ENST00000540797 LGI4Q8N135 537 aa13.63□□□□□ -0.23
USP3-204ENST00000540797 SCML4Q8N228 414 aa13.63□□□□□ -0.23
USP3-204ENST00000540797 OR4K1Q8NGD4 311 aa13.63□□□□□ -0.23
USP3-204ENST00000540797 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.63□□□□□ -0.235e-7■■□□□ 12.5
USP3-204ENST00000540797 HSFX1Q9UBD0 423 aa13.63□□□□□ -0.23
USP3-204ENST00000540797 PRODH2Q9UF12 536 aa13.63□□□□□ -0.23
USP3-204ENST00000540797 CPNE3O75131 537 aaKnown RBP13.62□□□□□ -0.23
USP3-204ENST00000540797 HMGN1P05114 100 aa13.62□□□□□ -0.23
USP3-204ENST00000540797 CXCL12P48061 93 aa13.62□□□□□ -0.23
USP3-204ENST00000540797 XKP51811 444 aa13.62□□□□□ -0.23
USP3-204ENST00000540797 ZNF41P51814 821 aaPredicted RBP13.62□□□□□ -0.23
USP3-204ENST00000540797 RPS15AP62244 130 aaKnown RBP13.62□□□□□ -0.23
USP3-204ENST00000540797 LAPTM4BQ86VI4 370 aa13.62□□□□□ -0.23
USP3-204ENST00000540797 FANCFQ9NPI8 374 aa13.62□□□□□ -0.23
USP3-204ENST00000540797 ABCB10Q9NRK6 738 aa13.62□□□□□ -0.23
USP3-204ENST00000540797 MCUBQ9NWR8 336 aa13.62□□□□□ -0.23
USP3-204ENST00000540797 CLEC4AQ9UMR7 237 aa13.62□□□□□ -0.23
USP3-204ENST00000540797 WDR45Q9Y484 360 aa13.62□□□□□ -0.23
USP3-204ENST00000540797 GPC6Q9Y625 555 aaPredicted RBP13.62□□□□□ -0.23
USP3-204ENST00000540797 ADGRE1Q14246 886 aa13.62□□□□□ -0.23
USP3-204ENST00000540797 MAPK14Q16539 360 aa13.62□□□□□ -0.23
USP3-204ENST00000540797 CLEC12AQ5QGZ9 265 aa13.62□□□□□ -0.23
USP3-204ENST00000540797 MPP7Q5T2T1 576 aa13.62□□□□□ -0.23
USP3-204ENST00000540797 NOXRED1Q6NXP6 359 aa13.62□□□□□ -0.23
USP3-204ENST00000540797 CCDC116Q8IYX3 515 aa13.62□□□□□ -0.23
USP3-204ENST00000540797 ZNF334Q9HCZ1 680 aaPredicted RBP13.62□□□□□ -0.23
USP3-204ENST00000540797 RARRES3Q9UL19 164 aa13.62□□□□□ -0.23
USP3-204ENST00000540797 MAN2B2Q9Y2E5 1009 aa13.62□□□□□ -0.23
USP3-204ENST00000540797 GOLGA4Q13439 2230 aaKnown RBP13.62□□□□□ -0.23
USP3-204ENST00000540797 TRIM3O75382 744 aaPredicted RBP13.62□□□□□ -0.23
USP3-204ENST00000540797 NADKO95544 446 aaPredicted RBP13.62□□□□□ -0.23
USP3-204ENST00000540797 PEX2P28328 305 aa13.62□□□□□ -0.23
USP3-204ENST00000540797 GALK1P51570 392 aa13.62□□□□□ -0.23
USP3-204ENST00000540797 PUM1Q14671 1186 aaKnown RBP eCLIP13.62□□□□□ -0.23
USP3-204ENST00000540797 LIN54Q6MZP7 749 aa13.62□□□□□ -0.23
USP3-204ENST00000540797 ZC3H14Q6PJT7 736 aaKnown RBP13.62□□□□□ -0.23
USP3-204ENST00000540797 RNF130Q86XS8 419 aa13.62□□□□□ -0.23
USP3-204ENST00000540797 PSMA8Q8TAA3 256 aa13.62□□□□□ -0.23
USP3-204ENST00000540797 ZNF576Q9H609 170 aa13.62□□□□□ -0.23
USP3-204ENST00000540797 CSNK1G1Q9HCP0 422 aa13.62□□□□□ -0.23
USP3-204ENST00000540797 PCDHGB7Q9Y5F8 929 aa13.62□□□□□ -0.23
USP3-204ENST00000540797 MYH6P13533 1939 aa13.62□□□□□ -0.23
USP3-204ENST00000540797 E7ESA3 106 aa13.62□□□□□ -0.23
USP3-204ENST00000540797 SMAD6O43541 496 aaKnown RBP13.62□□□□□ -0.23
USP3-204ENST00000540797 CYB5AP00167 134 aa13.62□□□□□ -0.23
USP3-204ENST00000540797 PDYNP01213 254 aa13.62□□□□□ -0.23
USP3-204ENST00000540797 ATF6P18850 670 aa13.62□□□□□ -0.23
USP3-204ENST00000540797 CD72P21854 359 aa13.62□□□□□ -0.23
USP3-204ENST00000540797 ERVFC1P60507 584 aa13.62□□□□□ -0.23
USP3-204ENST00000540797 KHDC1Q4VXA5 237 aaKnown RBP13.62□□□□□ -0.23
USP3-204ENST00000540797 COX4I2Q96KJ9 171 aa13.62□□□□□ -0.23
USP3-204ENST00000540797 ZNF778Q96MU6 729 aa13.62□□□□□ -0.23
USP3-204ENST00000540797 NSUN5Q96P11 429 aaKnown RBP13.62□□□□□ -0.23
USP3-204ENST00000540797 SLC35C2Q9NQQ7 365 aa13.62□□□□□ -0.23
USP3-204ENST00000540797 DNMT3BQ9UBC3 853 aaKnown RBP13.62□□□□□ -0.23
USP3-204ENST00000540797 TSC22D4Q9Y3Q8 395 aa13.62□□□□□ -0.23
USP3-204ENST00000540797 MYO9BQ13459 2157 aa13.61□□□□□ -0.23
USP3-204ENST00000540797 ARHGEF33A8MVX0 844 aa13.61□□□□□ -0.23
USP3-204ENST00000540797 LATO43561 262 aa13.61□□□□□ -0.23
USP3-204ENST00000540797 LYNP07948 512 aa13.61□□□□□ -0.23
USP3-204ENST00000540797 RBMS1P29558 406 aaKnown RBP13.61□□□□□ -0.23
USP3-204ENST00000540797 USP30Q70CQ3 517 aa13.61□□□□□ -0.23
USP3-204ENST00000540797 CEP97Q8IW35 865 aa13.61□□□□□ -0.23
USP3-204ENST00000540797 ASB9Q96DX5 294 aa13.61□□□□□ -0.23
USP3-204ENST00000540797 RNF38Q9H0F5 515 aa13.61□□□□□ -0.23
USP3-204ENST00000540797 MATN2O00339 956 aa13.61□□□□□ -0.23
USP3-204ENST00000540797 CD9P21926 228 aa13.61□□□□□ -0.23
USP3-204ENST00000540797 FDXRP22570 491 aa13.61□□□□□ -0.23
USP3-204ENST00000540797 ITGB7P26010 798 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms