RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 RPS15AP62244 130 aaKnown RBP6.85□□□□□ -1.31
YBX3-209ENST00000540747 CBX1P83916 185 aa6.85□□□□□ -1.31
YBX3-209ENST00000540747 MPP1Q00013 466 aa6.85□□□□□ -1.31
YBX3-209ENST00000540747 ABRAXAS2Q15018 415 aa6.85□□□□□ -1.31
YBX3-209ENST00000540747 RPS6KA1Q15418 735 aa6.85□□□□□ -1.31
YBX3-209ENST00000540747 SIX1Q15475 284 aaPredicted RBP6.85□□□□□ -1.31
YBX3-209ENST00000540747 CMPK2Q5EBM0 449 aa6.85□□□□□ -1.31
YBX3-209ENST00000540747 EMC4Q5J8M3 183 aa6.85□□□□□ -1.31
YBX3-209ENST00000540747 RNF187Q5TA31 235 aaPredicted RBP6.85□□□□□ -1.31
YBX3-209ENST00000540747 KIAA0930Q6ICG6 404 aaPredicted RBP6.85□□□□□ -1.31
YBX3-209ENST00000540747 CENPUQ71F23 418 aa6.85□□□□□ -1.31
YBX3-209ENST00000540747 PEX26Q7Z412 305 aa6.85□□□□□ -1.31
YBX3-209ENST00000540747 RPS19BP1Q86WX3 136 aaKnown RBP6.85□□□□□ -1.31
YBX3-209ENST00000540747 RPRMLQ8N4K4 120 aa6.85□□□□□ -1.31
YBX3-209ENST00000540747 KIF2BQ8N4N8 673 aa6.85□□□□□ -1.31
YBX3-209ENST00000540747 HORMAD2Q8N7B1 307 aa6.85□□□□□ -1.31
YBX3-209ENST00000540747 UBL4BQ8N7F7 174 aa6.85□□□□□ -1.31
YBX3-209ENST00000540747 ZFP62Q8NB50 900 aaPredicted RBP6.85□□□□□ -1.31
YBX3-209ENST00000540747 POGLUT1Q8NBL1 392 aa6.85□□□□□ -1.31
YBX3-209ENST00000540747 KCT2Q8NC54 265 aa6.85□□□□□ -1.31
YBX3-209ENST00000540747 ACRBPQ8NEB7 543 aa6.85□□□□□ -1.31
YBX3-209ENST00000540747 NFAM1Q8NET5 270 aaPredicted RBP6.85□□□□□ -1.31
YBX3-209ENST00000540747 C16orf52Q8NHV5 167 aa6.85□□□□□ -1.31
YBX3-209ENST00000540747 CA5BP1Q8WTZ4 195 aa6.85□□□□□ -1.31
YBX3-209ENST00000540747 FAM136AQ96C01 138 aa6.85□□□□□ -1.31
YBX3-209ENST00000540747 THAP11Q96EK4 314 aa6.85□□□□□ -1.31
YBX3-209ENST00000540747 MFSD3Q96ES6 412 aa6.85□□□□□ -1.31
YBX3-209ENST00000540747 PRAP1Q96NZ9 151 aa6.85□□□□□ -1.31
YBX3-209ENST00000540747 OR1F2PQ96R84 312 aa6.85□□□□□ -1.31
YBX3-209ENST00000540747 EBNA1BP2Q99848 306 aaKnown RBP6.85□□□□□ -1.31
YBX3-209ENST00000540747 MACROD1Q9BQ69 325 aa6.85□□□□□ -1.31
YBX3-209ENST00000540747 SARGQ9BW04 601 aa6.85□□□□□ -1.31
YBX3-209ENST00000540747 IL22Q9GZX6 179 aa6.85□□□□□ -1.31
YBX3-209ENST00000540747 DLL4Q9NR61 685 aa6.85□□□□□ -1.31
YBX3-209ENST00000540747 TMEM184CQ9NVA4 438 aa6.85□□□□□ -1.31
YBX3-209ENST00000540747 LRFN1Q9P244 771 aa6.85□□□□□ -1.31
YBX3-209ENST00000540747 PAK5Q9P286 719 aa6.85□□□□□ -1.31
YBX3-209ENST00000540747 KCNN3Q9UGI6 736 aa6.85□□□□□ -1.31
YBX3-209ENST00000540747 TSR3Q9UJK0 312 aaKnown RBP6.85□□□□□ -1.31
YBX3-209ENST00000540747 AMFRQ9UKV5 643 aa6.85□□□□□ -1.31
YBX3-209ENST00000540747 RNF6Q9Y252 685 aa6.85□□□□□ -1.31
YBX3-209ENST00000540747 PPP2R2CQ9Y2T4 447 aa6.85□□□□□ -1.31
YBX3-209ENST00000540747 SLC22A7Q9Y694 548 aa6.85□□□□□ -1.31
YBX3-209ENST00000540747 STAB1Q9NY15 2570 aa6.85□□□□□ -1.31
YBX3-209ENST00000540747 FN1P02751 2386 aaKnown RBP6.84□□□□□ -1.31
YBX3-209ENST00000540747 FEZF1A0PJY2 475 aa6.84□□□□□ -1.31
YBX3-209ENST00000540747 NKX2-6A6NCS4 301 aa6.84□□□□□ -1.31
YBX3-209ENST00000540747 FOXO6A8MYZ6 492 aa6.84□□□□□ -1.31
YBX3-209ENST00000540747 GOLGA8KD6RF30 607 aa6.84□□□□□ -1.31
YBX3-209ENST00000540747 E7EVH7 732 aa6.84□□□□□ -1.31
YBX3-209ENST00000540747 GOLGA8TH3BQL2 631 aa6.84□□□□□ -1.31
YBX3-209ENST00000540747 NDC80O14777 642 aa6.84□□□□□ -1.31
YBX3-209ENST00000540747 LCMT2O60294 686 aaKnown RBP6.84□□□□□ -1.31
YBX3-209ENST00000540747 DIAPH2O60879 1101 aa6.84□□□□□ -1.31
YBX3-209ENST00000540747 DNAJB6O75190 326 aa6.84□□□□□ -1.31
YBX3-209ENST00000540747 URI1O94763 535 aaPredicted RBP6.84□□□□□ -1.31
YBX3-209ENST00000540747 VAPBO95292 243 aa6.84□□□□□ -1.31
YBX3-209ENST00000540747 IFNB1P01574 187 aa6.84□□□□□ -1.31
YBX3-209ENST00000540747 HOXD4P09016 255 aaPredicted RBP6.84□□□□□ -1.31
YBX3-209ENST00000540747 ZSCAN5DPP0CG00 497 aa6.84□□□□□ -1.31
YBX3-209ENST00000540747 MPC1LP0DKB6 136 aa6.84□□□□□ -1.31
YBX3-209ENST00000540747 CHRNB4P30926 498 aa6.84□□□□□ -1.31
YBX3-209ENST00000540747 NPY2RP49146 381 aa6.84□□□□□ -1.31
YBX3-209ENST00000540747 HLCSP50747 726 aa6.84□□□□□ -1.31
YBX3-209ENST00000540747 NR0B1P51843 470 aaKnown RBP6.84□□□□□ -1.31
YBX3-209ENST00000540747 TBPL1P62380 186 aa6.84□□□□□ -1.31
YBX3-209ENST00000540747 NSDHLQ15738 373 aa6.84□□□□□ -1.31
YBX3-209ENST00000540747 ARMC3Q5W041 872 aa6.84□□□□□ -1.31
YBX3-209ENST00000540747 MRNIPQ6NTE8 343 aa6.84□□□□□ -1.31
YBX3-209ENST00000540747 ZNF549Q6P9A3 640 aa6.84□□□□□ -1.31
YBX3-209ENST00000540747 DRICH1Q6PGQ1 229 aaPredicted RBP6.84□□□□□ -1.31
YBX3-209ENST00000540747 CES3Q6UWW8 571 aa6.84□□□□□ -1.31
YBX3-209ENST00000540747 CD163Q86VB7 1156 aa6.84□□□□□ -1.31
YBX3-209ENST00000540747 SLC13A5Q86YT5 568 aaPredicted RBP6.84□□□□□ -1.31
YBX3-209ENST00000540747 TGIF2LYQ8IUE0 185 aa6.84□□□□□ -1.31
YBX3-209ENST00000540747 CILP2Q8IUL8 1156 aa6.84□□□□□ -1.31
YBX3-209ENST00000540747 TMEM139Q8IV31 216 aa6.84□□□□□ -1.31
YBX3-209ENST00000540747 EID3Q8N140 333 aa6.84□□□□□ -1.31
YBX3-209ENST00000540747 PRELID2Q8N945 189 aa6.84□□□□□ -1.31
YBX3-209ENST00000540747 FAM98AQ8NCA5 519 aaKnown RBP6.84□□□□□ -1.31
YBX3-209ENST00000540747 OR5T3Q8NGG3 340 aa6.84□□□□□ -1.31
YBX3-209ENST00000540747 ASB5Q8WWX0 329 aa6.84□□□□□ -1.31
YBX3-209ENST00000540747 NRGNQ92686 78 aa6.84□□□□□ -1.31
YBX3-209ENST00000540747 KCNJ9Q92806 393 aa6.84□□□□□ -1.31
YBX3-209ENST00000540747 LPAR4Q99677 370 aa6.84□□□□□ -1.31
YBX3-209ENST00000540747 FOXC2Q99958 501 aa6.84□□□□□ -1.31
YBX3-209ENST00000540747 SGPP1Q9BX95 441 aa6.84□□□□□ -1.31
YBX3-209ENST00000540747 FAM129AQ9BZQ8 928 aa6.84□□□□□ -1.31
YBX3-209ENST00000540747 CDCP1Q9H5V8 836 aa6.84□□□□□ -1.31
YBX3-209ENST00000540747 L2HGDHQ9H9P8 463 aa6.84□□□□□ -1.31
YBX3-209ENST00000540747 ARGLU1Q9NWB6 273 aaPredicted RBP6.84□□□□□ -1.31
YBX3-209ENST00000540747 SYBUQ9NX95 663 aa6.84□□□□□ -1.31
YBX3-209ENST00000540747 SOX13Q9UN79 622 aa6.84□□□□□ -1.31
YBX3-209ENST00000540747 PPIEQ9UNP9 301 aaKnown RBP6.84□□□□□ -1.31
YBX3-209ENST00000540747 CRYL1Q9Y2S2 319 aa6.84□□□□□ -1.31
YBX3-209ENST00000540747 NAALAD2Q9Y3Q0 740 aa6.84□□□□□ -1.31
YBX3-209ENST00000540747 CAPN6Q9Y6Q1 641 aa6.84□□□□□ -1.31
YBX3-209ENST00000540747 ZANQ9Y493 2812 aa6.83□□□□□ -1.32
YBX3-209ENST00000540747 TLN2Q9Y4G6 2542 aa6.83□□□□□ -1.32
YBX3-209ENST00000540747 A0A1B0GTH9 108 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms