RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 C20orf27Q9GZN8 174 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 MID1IP1Q9NPA3 183 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 SEMA4BQ9NPR2 832 aaPredicted RBP7.11□□□□□ -1.27
CD44-228ENST00000528455 ZDHHC2Q9UIJ5 367 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 PLAGL1Q9UM63 463 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 SNX7Q9UNH6 387 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 TSC22D4Q9Y3Q8 395 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 KLK4Q9Y5K2 254 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 RNF215Q9Y6U7 377 aa7.11□□□□□ -1.27
CD44-228ENST00000528455 GOLGA4Q13439 2230 aaKnown RBP7.11□□□□□ -1.27
CD44-228ENST00000528455 COL5A1P20908 1838 aaPredicted RBP7.11□□□□□ -1.27
CD44-228ENST00000528455 FRYQ5TBA9 3013 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 KCNE1BA0A087WTH5 132 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 IGHV1OR21-1A0A087WYE8 117 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 LY6G6EA0A0G2JKS1 128 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 OR5K3A6NET4 321 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 SLC22A31A6NKX4 558 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 ISM1B1AKI9 464 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 PPP6CO00743 305 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 HGSO14964 777 aaPredicted RBP7.1□□□□□ -1.27
CD44-228ENST00000528455 TOX3O15405 576 aaPredicted RBP7.1□□□□□ -1.27
CD44-228ENST00000528455 EDF1O60869 148 aaKnown RBP7.1□□□□□ -1.27
CD44-228ENST00000528455 SLITRK5O94991 958 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 ENO1P06733 434 aaKnown RBP7.1□□□□□ -1.27
CD44-228ENST00000528455 PROS1P07225 676 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 GP1BAP07359 652 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 VIMP08670 466 aaKnown RBP7.1□□□□□ -1.27
CD44-228ENST00000528455 UROSP10746 265 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 HGFP14210 728 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 CKMT2P17540 419 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 POLR2CP19387 275 aaPredicted RBP7.1□□□□□ -1.27
CD44-228ENST00000528455 ACP1P24666 158 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 CD1CP29017 333 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 ALDH4A1P30038 563 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 CCR8P51685 355 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 ERVPABLB-1P60509 514 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 TBPL1P62380 186 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 IRF8Q02556 426 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 DOC2AQ14183 400 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 HIST2H2ACQ16777 129 aaPredicted RBP7.1□□□□□ -1.27
CD44-228ENST00000528455 UGT3A2Q3SY77 523 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 GGTA1PQ4G0N0 100 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 FBXO48Q5FWF7 155 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 PAGE2BQ5JRK9 111 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 TTC19Q6DKK2 380 aaPredicted RBP7.1□□□□□ -1.27
CD44-228ENST00000528455 HIST2H2AA3Q6FI13 130 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 ATG14Q6ZNE5 492 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 RNF165Q6ZSG1 346 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 GPRIN3Q6ZVF9 776 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 CPLX4Q7Z7G2 160 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 OOSP2Q86WS3 158 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 FAM129CQ86XR2 697 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 PLXDC1Q8IUK5 500 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 WDR75Q8IWA0 830 aaKnown RBP7.1□□□□□ -1.27
CD44-228ENST00000528455 AFAP1L2Q8N4X5 818 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 C2orf73Q8N5S3 287 aaPredicted RBP7.1□□□□□ -1.27
CD44-228ENST00000528455 SNX31Q8N9S9 440 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 KYQ8NBH2 561 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 FAM13CQ8NE31 585 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 OR2L3Q8NG85 312 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 OR4F6Q8NGB9 312 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 OR10G6Q8NH81 332 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 FLVCR1-AS1Q8TAF5 88 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 METTL6Q8TCB7 284 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 AGAP11Q8TF27 550 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 SLC5A11Q8WWX8 675 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 NEIL2Q969S2 332 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 UBE2E3Q969T4 207 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 PTCD3Q96EY7 689 aaKnown RBP7.1□□□□□ -1.27
CD44-228ENST00000528455 CHMP6Q96FZ7 201 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 AHCYL2Q96HN2 611 aaKnown RBP7.1□□□□□ -1.27
CD44-228ENST00000528455 SEC16BQ96JE7 1060 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 IL17FQ96PD4 163 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 CD180Q99467 661 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 SORT1Q99523 831 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 CDC6Q99741 560 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 SIKE1Q9BRV8 207 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 EFCAB11Q9BUY7 163 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 SCNM1Q9BWG6 230 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 TBC1D10AQ9BXI6 508 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 CHRNA10Q9GZZ6 450 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 EPN3Q9H201 632 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 XKR8Q9H6D3 395 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 PELI2Q9HAT8 420 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 SPHK1Q9NYA1 384 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 ACTR10Q9NZ32 417 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 SEMA5BQ9P283 1151 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 PDP2Q9P2J9 529 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 ANKMY1Q9P2S6 941 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 CIDEBQ9UHD4 219 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 TRPS1Q9UHF7 1281 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 ADGRE2Q9UHX3 823 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 ZNF225Q9UK10 706 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 PPT2Q9UMR5 302 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 ASB1Q9Y576 335 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 U3KQA8 63 aa7.1□□□□□ -1.27
CD44-228ENST00000528455 ASXL3Q9C0F0 2248 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 RP1P56715 2156 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 CPED1A4D0V7 1026 aa7.09□□□□□ -1.27
CD44-228ENST00000528455 KRT87PA6NCN2 255 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms