RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	IDH3B	O43837	385 aa		3.91	□□□□□ -1.78
CD44-223	ENST00000526553	CEACAM4	O75871	244 aa		3.91	□□□□□ -1.78
CD44-223	ENST00000526553	PNP	P00491	289 aa		3.91	□□□□□ -1.78
CD44-223	ENST00000526553	THEGL	P0DJG4	465 aa		3.91	□□□□□ -1.78
CD44-223	ENST00000526553	EEF2	P13639	858 aa	Known RBP	3.91	□□□□□ -1.78
CD44-223	ENST00000526553	MYL6B	P14649	208 aa		3.91	□□□□□ -1.78
CD44-223	ENST00000526553	ZNF10	P21506	573 aa	Predicted RBP	3.91	□□□□□ -1.78
CD44-223	ENST00000526553	CRKL	P46109	303 aa	Known RBP	3.91	□□□□□ -1.78
CD44-223	ENST00000526553	XG	P55808	180 aa		3.91	□□□□□ -1.78
CD44-223	ENST00000526553	SLC8A3	P57103	927 aa		3.91	□□□□□ -1.78
CD44-223	ENST00000526553	DLK1	P80370	383 aa		3.91	□□□□□ -1.78
CD44-223	ENST00000526553	TEF	Q10587	303 aa		3.91	□□□□□ -1.78
CD44-223	ENST00000526553	ELAVL2	Q12926	359 aa	Known RBP	3.91	□□□□□ -1.78
CD44-223	ENST00000526553	SGCG	Q13326	291 aa		3.91	□□□□□ -1.78
CD44-223	ENST00000526553	CDH18	Q13634	790 aa		3.91	□□□□□ -1.78
CD44-223	ENST00000526553	PTPN14	Q15678	1187 aa		3.91	□□□□□ -1.78
CD44-223	ENST00000526553	MOGAT2	Q3SYC2	334 aa		3.91	□□□□□ -1.78
CD44-223	ENST00000526553	FRRS1	Q6ZNA5	592 aa		3.91	□□□□□ -1.78
CD44-223	ENST00000526553	SYCP3	Q8IZU3	236 aa		3.91	□□□□□ -1.78
CD44-223	ENST00000526553	OR7G3	Q8NG95	312 aa		3.91	□□□□□ -1.78
CD44-223	ENST00000526553	OR5T2	Q8NGG2	359 aa		3.91	□□□□□ -1.78
CD44-223	ENST00000526553	PSMA8	Q8TAA3	256 aa		3.91	□□□□□ -1.78
CD44-223	ENST00000526553	MGARP	Q8TDB4	240 aa		3.91	□□□□□ -1.78
CD44-223	ENST00000526553	RAD54L	Q92698	747 aa		3.91	□□□□□ -1.78
CD44-223	ENST00000526553	TEKT1	Q969V4	418 aa		3.91	□□□□□ -1.78
CD44-223	ENST00000526553	PRICKLE1	Q96MT3	831 aa	Predicted RBP	3.91	□□□□□ -1.78
CD44-223	ENST00000526553	TUFT1	Q9NNX1	390 aa		3.91	□□□□□ -1.78
CD44-223	ENST00000526553	NDE1	Q9NXR1	346 aa		3.91	□□□□□ -1.78
CD44-223	ENST00000526553	NUDT4	Q9NZJ9	180 aa		3.91	□□□□□ -1.78
CD44-223	ENST00000526553	THEG	Q9P2T0	379 aa		3.91	□□□□□ -1.78
CD44-223	ENST00000526553	KLK13	Q9UKR3	277 aa		3.91	□□□□□ -1.78
CD44-223	ENST00000526553	WIPI2	Q9Y4P8	454 aa		3.91	□□□□□ -1.78
CD44-223	ENST00000526553	GPRASP1	Q5JY77	1395 aa		3.9	□□□□□ -1.78
CD44-223	ENST00000526553	IGHV3OR16-10	A0A075B7F0	116 aa		3.9	□□□□□ -1.79
CD44-223	ENST00000526553	SDR42E2	A6NKP2	422 aa		3.9	□□□□□ -1.79
CD44-223	ENST00000526553	PI15	O43692	258 aa		3.9	□□□□□ -1.79
CD44-223	ENST00000526553	RTN2	O75298	545 aa		3.9	□□□□□ -1.79
CD44-223	ENST00000526553	PGLS	O95336	258 aa		3.9	□□□□□ -1.79
CD44-223	ENST00000526553	BAG3	O95817	575 aa		3.9	□□□□□ -1.79
CD44-223	ENST00000526553	GSR	P00390	522 aa		3.9	□□□□□ -1.79
CD44-223	ENST00000526553	RLN1	P04808	185 aa		3.9	□□□□□ -1.79
CD44-223	ENST00000526553	GATA1	P15976	413 aa	Predicted RBP	3.9	□□□□□ -1.79
CD44-223	ENST00000526553	AZGP1	P25311	298 aa	Known RBP	3.9	□□□□□ -1.79
CD44-223	ENST00000526553	TIA1	P31483	386 aa	Known RBP eCLIP	3.9	□□□□□ -1.79
CD44-223	ENST00000526553	HSD17B3	P37058	310 aa		3.9	□□□□□ -1.79
CD44-223	ENST00000526553	CASP3	P42574	277 aa		3.9	□□□□□ -1.79
CD44-223	ENST00000526553	OR3A2	P47893	321 aa		3.9	□□□□□ -1.79
CD44-223	ENST00000526553	KHK	P50053	298 aa		3.9	□□□□□ -1.79
CD44-223	ENST00000526553	DSCR10	P59022	87 aa		3.9	□□□□□ -1.79
CD44-223	ENST00000526553	IRX4	P78413	519 aa		3.9	□□□□□ -1.79
CD44-223	ENST00000526553	RASGEF1B	Q0VAM2	473 aa		3.9	□□□□□ -1.79
CD44-223	ENST00000526553	ILF2	Q12905	390 aa	Known RBP	3.9	□□□□□ -1.79
CD44-223	ENST00000526553	SRSF9	Q13242	221 aa	Known RBP eCLIP	3.9	□□□□□ -1.79
CD44-223	ENST00000526553	RCN2	Q14257	317 aa		3.9	□□□□□ -1.79
CD44-223	ENST00000526553	MTF1	Q14872	753 aa		3.9	□□□□□ -1.79
CD44-223	ENST00000526553	OPCML	Q14982	345 aa		3.9	□□□□□ -1.79
CD44-223	ENST00000526553	KRT71	Q3SY84	523 aa		3.9	□□□□□ -1.79
CD44-223	ENST00000526553	KBTBD12	Q3ZCT8	623 aa		3.9	□□□□□ -1.79
CD44-223	ENST00000526553	LRRC73	Q5JTD7	316 aa		3.9	□□□□□ -1.79
CD44-223	ENST00000526553	PAQR6	Q6TCH4	344 aa		3.9	□□□□□ -1.79
CD44-223	ENST00000526553	FCRLA	Q7L513	359 aa		3.9	□□□□□ -1.79
CD44-223	ENST00000526553	CLYBL	Q8N0X4	340 aa		3.9	□□□□□ -1.79
CD44-223	ENST00000526553	NAT8L	Q8N9F0	302 aa		3.9	□□□□□ -1.79
CD44-223	ENST00000526553	OR8H1	Q8NGG4	311 aa		3.9	□□□□□ -1.79
CD44-223	ENST00000526553	HEXDC	Q8WVB3	486 aa		3.9	□□□□□ -1.79
CD44-223	ENST00000526553	METTL21A	Q8WXB1	218 aa		3.9	□□□□□ -1.79
CD44-223	ENST00000526553	NSMAF	Q92636	917 aa		3.9	□□□□□ -1.79
CD44-223	ENST00000526553	ATP6V0A1	Q93050	837 aa		3.9	□□□□□ -1.79
CD44-223	ENST00000526553	OMA1	Q96E52	524 aa		3.9	□□□□□ -1.79
CD44-223	ENST00000526553	CDHR1	Q96JP9	859 aa		3.9	□□□□□ -1.79
CD44-223	ENST00000526553	CABS1	Q96KC9	395 aa		3.9	□□□□□ -1.79
CD44-223	ENST00000526553	CDCA3	Q99618	268 aa	Predicted RBP	3.9	□□□□□ -1.79
CD44-223	ENST00000526553	GTPBP2	Q9BX10	602 aa	Known RBP	3.9	□□□□□ -1.79
CD44-223	ENST00000526553	HOXD1	Q9GZZ0	328 aa		3.9	□□□□□ -1.79
CD44-223	ENST00000526553	ACTL8	Q9H568	366 aa		3.9	□□□□□ -1.79
CD44-223	ENST00000526553	MID1IP1	Q9NPA3	183 aa		3.9	□□□□□ -1.79
CD44-223	ENST00000526553	STAU2	Q9NUL3	570 aa	Known RBP eCLIP	3.9	□□□□□ -1.79
CD44-223	ENST00000526553	DNAJC17	Q9NVM6	304 aa	Known RBP	3.9	□□□□□ -1.79
CD44-223	ENST00000526553	PRDM4	Q9UKN5	801 aa		3.9	□□□□□ -1.79
CD44-223	ENST00000526553	ELF5	Q9UKW6	265 aa	Predicted RBP	3.9	□□□□□ -1.79
CD44-223	ENST00000526553	MOB4	Q9Y3A3	225 aa		3.9	□□□□□ -1.79
CD44-223	ENST00000526553	SELENOK	Q9Y6D0	94 aa		3.9	□□□□□ -1.79
CD44-223	ENST00000526553	SMAD5-AS1	Q9Y6J3	95 aa		3.9	□□□□□ -1.79
CD44-223	ENST00000526553	LOC105371242	A0A075B767	164 aa		3.89	□□□□□ -1.79
CD44-223	ENST00000526553		A0A1B0GVY2	172 aa		3.89	□□□□□ -1.79
CD44-223	ENST00000526553	FAM86B1	E9PN63	330 aa		3.89	□□□□□ -1.79
CD44-223	ENST00000526553	C9	P02748	559 aa		3.89	□□□□□ -1.79
CD44-223	ENST00000526553	FAM86B2	P0C5J1	330 aa		3.89	□□□□□ -1.79
CD44-223	ENST00000526553	SPP1	P10451	314 aa		3.89	□□□□□ -1.79
CD44-223	ENST00000526553	ELAVL4	P26378	380 aa	Known RBP	3.89	□□□□□ -1.79
CD44-223	ENST00000526553	SHC1	P29353	583 aa		3.89	□□□□□ -1.79
CD44-223	ENST00000526553	SOX3	P41225	446 aa		3.89	□□□□□ -1.79
CD44-223	ENST00000526553	UBASH3A	P57075	661 aa		3.89	□□□□□ -1.79
CD44-223	ENST00000526553	ST8SIA6	P61647	398 aa		3.89	□□□□□ -1.79
CD44-223	ENST00000526553	ARF5	P84085	180 aa		3.89	□□□□□ -1.79
CD44-223	ENST00000526553	TNK1	Q13470	666 aa		3.89	□□□□□ -1.79
CD44-223	ENST00000526553	RAPSN	Q13702	412 aa		3.89	□□□□□ -1.79
CD44-223	ENST00000526553	ENPP2	Q13822	863 aa		3.89	□□□□□ -1.79
CD44-223	ENST00000526553	LY6D	Q14210	128 aa		3.89	□□□□□ -1.79
CD44-223	ENST00000526553	TMEM132D	Q14C87	1099 aa		3.89	□□□□□ -1.79

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