RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 GPRC5BQ9NZH0 403 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 IFT80Q9P2H3 777 aaPredicted RBP9.66□□□□□ -0.86
VPS28-204ENST00000526054 CPSF2Q9P2I0 782 aaKnown RBP9.66□□□□□ -0.86
VPS28-204ENST00000526054 NDOR1Q9UHB4 597 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 PTBP2Q9UKA9 531 aaKnown RBP9.66□□□□□ -0.86
VPS28-204ENST00000526054 SRPK3Q9UPE1 567 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 SLC22A14Q9Y267 594 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 PTRH2Q9Y3E5 179 aaKnown RBP9.66□□□□□ -0.86
VPS28-204ENST00000526054 CCDC88CQ9P219 2028 aa9.66□□□□□ -0.86
VPS28-204ENST00000526054 A1L4Q6 167 aa9.65□□□□□ -0.86
VPS28-204ENST00000526054 PEX12O00623 359 aa9.65□□□□□ -0.86
VPS28-204ENST00000526054 MAP2K7O14733 419 aa9.65□□□□□ -0.86
VPS28-204ENST00000526054 HAT1O14929 419 aa9.65□□□□□ -0.86
VPS28-204ENST00000526054 TAPBPO15533 448 aa9.65□□□□□ -0.86
VPS28-204ENST00000526054 CCNT2O60583 730 aaKnown RBP9.65□□□□□ -0.86
VPS28-204ENST00000526054 GLRA3O75311 464 aa9.65□□□□□ -0.86
VPS28-204ENST00000526054 KLF7O75840 302 aaPredicted RBP9.65□□□□□ -0.86
VPS28-204ENST00000526054 IGHEP01854 428 aa9.65□□□□□ -0.86
VPS28-204ENST00000526054 RNF224P0DH78 156 aa9.65□□□□□ -0.86
VPS28-204ENST00000526054 MTHFD2P13995 350 aa9.65□□□□□ -0.86
VPS28-204ENST00000526054 GNAZP19086 355 aa9.65□□□□□ -0.86
VPS28-204ENST00000526054 TAC1P20366 129 aa9.65□□□□□ -0.86
VPS28-204ENST00000526054 KCNC1P48547 511 aa9.65□□□□□ -0.86
VPS28-204ENST00000526054 ALDH18A1P54886 795 aaKnown RBP9.65□□□□□ -0.86
VPS28-204ENST00000526054 VSX2P58304 361 aaPredicted RBP9.65□□□□□ -0.86
VPS28-204ENST00000526054 RPS15AP62244 130 aaKnown RBP9.65□□□□□ -0.86
VPS28-204ENST00000526054 CSNK1G2P78368 415 aa9.65□□□□□ -0.86
VPS28-204ENST00000526054 DCDP81605 110 aaKnown RBP9.65□□□□□ -0.86
VPS28-204ENST00000526054 GRM7Q14831 915 aa9.65□□□□□ -0.86
VPS28-204ENST00000526054 SETDB1Q15047 1291 aa9.65□□□□□ -0.86
VPS28-204ENST00000526054 PDK4Q16654 411 aa9.65□□□□□ -0.86
VPS28-204ENST00000526054 PFKFB4Q16877 469 aa9.65□□□□□ -0.86
VPS28-204ENST00000526054 C18orf21Q32NC0 220 aaPredicted RBP9.65□□□□□ -0.86
VPS28-204ENST00000526054 DCAF10Q5QP82 559 aa9.65□□□□□ -0.86
VPS28-204ENST00000526054 YOD1Q5VVQ6 348 aaPredicted RBP9.65□□□□□ -0.86
VPS28-204ENST00000526054 TMPRSS11BQ86T26 416 aa9.65□□□□□ -0.86
VPS28-204ENST00000526054 LURAP1LQ8IV03 231 aa9.65□□□□□ -0.86
VPS28-204ENST00000526054 ABHD11Q8NFV4 315 aa9.65□□□□□ -0.86
VPS28-204ENST00000526054 PRR7Q8TB68 274 aa9.65□□□□□ -0.86
VPS28-204ENST00000526054 NEIL2Q969S2 332 aa9.65□□□□□ -0.86
VPS28-204ENST00000526054 THAP11Q96EK4 314 aa9.65□□□□□ -0.86
VPS28-204ENST00000526054 GBP5Q96PP8 586 aa9.65□□□□□ -0.86
VPS28-204ENST00000526054 NDC1Q9BTX1 674 aa9.65□□□□□ -0.86
VPS28-204ENST00000526054 TMEM109Q9BVC6 243 aa9.65□□□□□ -0.86
VPS28-204ENST00000526054 CD244Q9BZW8 370 aa9.65□□□□□ -0.86
VPS28-204ENST00000526054 SPRTNQ9H040 489 aaPredicted RBP9.65□□□□□ -0.86
VPS28-204ENST00000526054 ILKAPQ9H0C8 392 aaPredicted RBP9.65□□□□□ -0.86
VPS28-204ENST00000526054 C5AR2Q9P296 337 aa9.65□□□□□ -0.86
VPS28-204ENST00000526054 OPTCQ9UBM4 332 aa9.65□□□□□ -0.86
VPS28-204ENST00000526054 DHCR7Q9UBM7 475 aaKnown RBP9.65□□□□□ -0.86
VPS28-204ENST00000526054 DCDC2Q9UHG0 476 aa9.65□□□□□ -0.86
VPS28-204ENST00000526054 LGALS13Q9UHV8 139 aa9.65□□□□□ -0.86
VPS28-204ENST00000526054 SH2B3Q9UQQ2 575 aa9.65□□□□□ -0.86
VPS28-204ENST00000526054 ANGPTL3Q9Y5C1 460 aa9.65□□□□□ -0.86
VPS28-204ENST00000526054 TNPO3Q9Y5L0 923 aaKnown RBP9.65□□□□□ -0.86
VPS28-204ENST00000526054 SEC16AO15027 2179 aa9.65□□□□□ -0.86
VPS28-204ENST00000526054 CACNA1DQ01668 2161 aa9.65□□□□□ -0.86
VPS28-204ENST00000526054 NOTCH2Q04721 2471 aa9.65□□□□□ -0.86
VPS28-204ENST00000526054 PRRC2CQ9Y520 2896 aaKnown RBP9.65□□□□□ -0.87
VPS28-204ENST00000526054 HIVEP3Q5T1R4 2406 aa9.64□□□□□ -0.87
VPS28-204ENST00000526054 A0A1W2PPM1 405 aa9.64□□□□□ -0.87
VPS28-204ENST00000526054 H0YGG7 62 aa9.64□□□□□ -0.87
VPS28-204ENST00000526054 H3BMH7 237 aa9.64□□□□□ -0.87
VPS28-204ENST00000526054 STX16-NPEPL1H3BU86 382 aa9.64□□□□□ -0.87
VPS28-204ENST00000526054 K7EPI3 171 aa9.64□□□□□ -0.87
VPS28-204ENST00000526054 TXNDC9O14530 226 aa9.64□□□□□ -0.87
VPS28-204ENST00000526054 COPEO14579 308 aa9.64□□□□□ -0.87
VPS28-204ENST00000526054 STX16O14662 325 aa9.64□□□□□ -0.87
VPS28-204ENST00000526054 CLGNO14967 610 aa9.64□□□□□ -0.87
VPS28-204ENST00000526054 HCRTR1O43613 425 aa9.64□□□□□ -0.87
VPS28-204ENST00000526054 KLK8O60259 260 aa9.64□□□□□ -0.87
VPS28-204ENST00000526054 NRP2O60462 931 aa9.64□□□□□ -0.87
VPS28-204ENST00000526054 KLHL41O60662 606 aa9.64□□□□□ -0.87
VPS28-204ENST00000526054 CD63P08962 238 aa9.64□□□□□ -0.87
VPS28-204ENST00000526054 CXCR2P25025 360 aa9.64□□□□□ -0.87
VPS28-204ENST00000526054 GDF5P43026 501 aa9.64□□□□□ -0.87
VPS28-204ENST00000526054 CCT5P48643 541 aa9.64□□□□□ -0.87
VPS28-204ENST00000526054 PIK3CGP48736 1102 aa9.64□□□□□ -0.87
VPS28-204ENST00000526054 ARSFP54793 590 aa9.64□□□□□ -0.87
VPS28-204ENST00000526054 ARF3P61204 181 aaPredicted RBP9.64□□□□□ -0.87
VPS28-204ENST00000526054 REEP5Q00765 189 aa9.64□□□□□ -0.87
VPS28-204ENST00000526054 SSPNQ14714 243 aa9.64□□□□□ -0.87
VPS28-204ENST00000526054 MYBPC3Q14896 1274 aa9.64□□□□□ -0.87
VPS28-204ENST00000526054 NR6A1Q15406 480 aa9.64□□□□□ -0.87
VPS28-204ENST00000526054 EIF2S3LQ2VIR3 472 aaKnown RBP9.64□□□□□ -0.87
VPS28-204ENST00000526054 KRT71Q3SY84 523 aa9.64□□□□□ -0.87
VPS28-204ENST00000526054 FBXO48Q5FWF7 155 aa9.64□□□□□ -0.87
VPS28-204ENST00000526054 WASHC2DQ5SRD0 308 aa9.64□□□□□ -0.87
VPS28-204ENST00000526054 FRMPD2BQ6IN97 320 aa9.64□□□□□ -0.87
VPS28-204ENST00000526054 METTL2BQ6P1Q9 378 aaKnown RBP9.64□□□□□ -0.87
VPS28-204ENST00000526054 NXPE4Q6UWF7 544 aa9.64□□□□□ -0.87
VPS28-204ENST00000526054 HDXQ7Z353 690 aa9.64□□□□□ -0.87
VPS28-204ENST00000526054 CYP4X1Q8N118 509 aa9.64□□□□□ -0.87
VPS28-204ENST00000526054 GALNT16Q8N428 558 aa9.64□□□□□ -0.87
VPS28-204ENST00000526054 ZNF655Q8N720 491 aaPredicted RBP9.64□□□□□ -0.87
VPS28-204ENST00000526054 CSNK1A1LQ8N752 337 aa9.64□□□□□ -0.87
VPS28-204ENST00000526054 PTGR2Q8N8N7 351 aaPredicted RBP9.64□□□□□ -0.87
VPS28-204ENST00000526054 OR2Y1Q8NGV0 311 aa9.64□□□□□ -0.87
VPS28-204ENST00000526054 TM9SF4Q92544 642 aa9.64□□□□□ -0.87
VPS28-204ENST00000526054 ESAMQ96AP7 390 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms