RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 CLEC4MQ9H2X3 399 aaPredicted RBP11.32□□□□□ -0.6
SYNPO-204ENST00000519664 POLE4Q9NR33 117 aa11.32□□□□□ -0.6
SYNPO-204ENST00000519664 CDK5RAP2Q96SN8 1893 aa11.32□□□□□ -0.6
SYNPO-204ENST00000519664 LATO43561 262 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 ABCB7O75027 752 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 CTSOP43234 321 aaPredicted RBP11.31□□□□□ -0.6
SYNPO-204ENST00000519664 PRR5P85299 388 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 ID2Q02363 134 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 TAF8Q7Z7C8 310 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 ZFAND4Q86XD8 727 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 CMTM7Q96FZ5 175 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 MRPS30Q9NP92 439 aaKnown RBP11.31□□□□□ -0.6
SYNPO-204ENST00000519664 ERVK-18Q9QC07 812 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 ZNF222Q9UK12 451 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 RABL2BQ9UNT1 228 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 SLC35F4A4IF30 521 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 NPIPB15A6NHN6 443 aaPredicted RBP11.31□□□□□ -0.6
SYNPO-204ENST00000519664 HIST1H2ABP04908 130 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 SLC35G6P0C7Q6 338 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 HTR1EP28566 365 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 MLLT1Q03111 559 aaPredicted RBP11.31□□□□□ -0.6
SYNPO-204ENST00000519664 HYAL2Q12891 473 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 LARS2Q15031 903 aaKnown RBP11.31□□□□□ -0.6
SYNPO-204ENST00000519664 PON2Q15165 354 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 CNKSR3Q6P9H4 555 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 NCEH1Q6PIU2 408 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 HIST3H2AQ7L7L0 130 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 ANKLE1Q8NAG6 615 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 JPH3Q8WXH2 748 aaPredicted RBP11.31□□□□□ -0.6
SYNPO-204ENST00000519664 HIST1H2ACQ93077 130 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 L3HYPDHQ96EM0 354 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 APIPQ96GX9 242 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 INPP5KQ9BT40 448 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 SRMSQ9H3Y6 488 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 C5AR2Q9P296 337 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 NDRG2Q9UN36 371 aaKnown RBP11.31□□□□□ -0.6
SYNPO-204ENST00000519664 NDUFS4O43181 175 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 DENRO43583 198 aaKnown RBP11.31□□□□□ -0.6
SYNPO-204ENST00000519664 SLC16A8O95907 504 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 GSTT2P0CG29 244 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 GSTT2BP0CG30 244 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 GPX3P22352 226 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 CPN2P22792 545 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 XKP51811 444 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 VMACQ2NL98 169 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 ENPP7Q6UWV6 458 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 SRFBP1Q8NEF9 429 aaKnown RBP11.31□□□□□ -0.6
SYNPO-204ENST00000519664 OR10H4Q8NGA5 316 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 OR4E2Q8NGC2 313 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 GPR151Q8TDV0 419 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 NUDT8Q8WV74 236 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 BARD1Q99728 777 aaKnown RBP11.31□□□□□ -0.6
SYNPO-204ENST00000519664 MGME1Q9BQP7 344 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 INSL6Q9Y581 213 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 FUOMA2VDF0 154 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 PITPNM1O00562 1244 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 SLC30A4O14863 429 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 EEDO75530 441 aaKnown RBP11.31□□□□□ -0.6
SYNPO-204ENST00000519664 C8BP07358 591 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 LAMP1P11279 417 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 CDK4P11802 303 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 CMPK1P30085 196 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 VIPR2P41587 438 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 SPIN4Q56A73 249 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 KANK2Q63ZY3 851 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 FAAH2Q6GMR7 532 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 MZT2AQ6P582 158 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 NUDT13Q86X67 352 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 LILRA2Q8N149 483 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 ZNF296Q8WUU4 475 aaPredicted RBP11.31□□□□□ -0.6
SYNPO-204ENST00000519664 MRPL48Q96GC5 212 aaKnown RBP11.31□□□□□ -0.6
SYNPO-204ENST00000519664 ERVW-1Q9UQF0 538 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 HEMK1Q9Y5R4 338 aaPredicted RBP11.31□□□□□ -0.6
SYNPO-204ENST00000519664 PMF1-BGLAPU3KQ54 211 aa11.31□□□□□ -0.6
SYNPO-204ENST00000519664 FAM86C2PA6NEL3 165 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 RASAL1O95294 804 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 RHOP08100 348 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 HOXB6P17509 224 aaKnown RBP11.3□□□□□ -0.6
SYNPO-204ENST00000519664 GDI1P31150 447 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 CCR8P51685 355 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 SKP1P63208 163 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 MYBPC1Q00872 1141 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 ILF3Q12906 894 aaKnown RBP eCLIP11.3□□□□□ -0.6
SYNPO-204ENST00000519664 PMS2P3Q13401 168 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 LRP8Q14114 963 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 GRM2Q14416 872 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 HDDC2Q7Z4H3 204 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 TCEANCQ8N8B7 351 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 GLYATL1Q969I3 302 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 RBM18Q96H35 190 aaKnown RBP11.3□□□□□ -0.6
SYNPO-204ENST00000519664 ZNF514Q96K75 400 aaPredicted RBP11.3□□□□□ -0.6
SYNPO-204ENST00000519664 MYRFLQ96LU7 910 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 ALPK1Q96QP1 1244 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 HCFC1R1Q9NWW0 138 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 UTS2RQ9UKP6 389 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 IKZF2Q9UKS7 526 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 PCDHB14Q9Y5E9 798 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 CROCCQ5TZA2 2017 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 ARID1AO14497 2285 aa11.3□□□□□ -0.6
SYNPO-204ENST00000519664 CCRL2O00421 344 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms