RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 ADAMTSL4Q6UY14 1074 aa14.28□□□□□ -0.12
NUP54-217ENST00000514987 RBM23Q86U06 439 aaKnown RBP14.28□□□□□ -0.12
NUP54-217ENST00000514987 LRRC56Q8IYG6 542 aaPredicted RBP14.28□□□□□ -0.12
NUP54-217ENST00000514987 GPR156Q8NFN8 814 aa14.28□□□□□ -0.12
NUP54-217ENST00000514987 FOXJ1Q92949 421 aa14.28□□□□□ -0.12
NUP54-217ENST00000514987 PPCDCQ96CD2 204 aa14.28□□□□□ -0.12
NUP54-217ENST00000514987 ZNF347Q96SE7 839 aa14.28□□□□□ -0.12
NUP54-217ENST00000514987 FAM129BQ96TA1 746 aa14.28□□□□□ -0.12
NUP54-217ENST00000514987 DOHHQ9BU89 302 aa14.28□□□□□ -0.12
NUP54-217ENST00000514987 TMEM245Q9H330 911 aa14.28□□□□□ -0.12
NUP54-217ENST00000514987 SCN3BQ9NY72 215 aa14.28□□□□□ -0.12
NUP54-217ENST00000514987 VNN3Q9NY84 501 aa14.28□□□□□ -0.12
NUP54-217ENST00000514987 KIF17Q9P2E2 1029 aa14.28□□□□□ -0.12
NUP54-217ENST00000514987 COQ6Q9Y2Z9 468 aa14.28□□□□□ -0.12
NUP54-217ENST00000514987 PCDHGB3Q9Y5G1 929 aa14.28□□□□□ -0.12
NUP54-217ENST00000514987 DNMT3AQ9Y6K1 912 aaPredicted RBP14.28□□□□□ -0.12
NUP54-217ENST00000514987 DENND4AQ7Z401 1863 aa14.28□□□□□ -0.12
NUP54-217ENST00000514987 MUC22E2RYF6 1773 aaPredicted RBP14.28□□□□□ -0.12
NUP54-217ENST00000514987 hCG_2039718K7EN88 272 aa14.27□□□□□ -0.12
NUP54-217ENST00000514987 B4GAT1O43505 415 aa14.27□□□□□ -0.12
NUP54-217ENST00000514987 MMP20O60882 483 aa14.27□□□□□ -0.12
NUP54-217ENST00000514987 IFNA14P01570 189 aa14.27□□□□□ -0.12
NUP54-217ENST00000514987 FURINP09958 794 aa14.27□□□□□ -0.12
NUP54-217ENST00000514987 ZNF8P17098 575 aaPredicted RBP14.27□□□□□ -0.12
NUP54-217ENST00000514987 CXCR2P25025 360 aa14.27□□□□□ -0.12
NUP54-217ENST00000514987 DAPP51397 102 aa14.27□□□□□ -0.12
NUP54-217ENST00000514987 VLDLRP98155 873 aa14.27□□□□□ -0.12
NUP54-217ENST00000514987 IL5RAQ01344 420 aa14.27□□□□□ -0.12
NUP54-217ENST00000514987 CTBSQ01459 385 aa14.27□□□□□ -0.12
NUP54-217ENST00000514987 CAMK1Q14012 370 aa14.27□□□□□ -0.12
NUP54-217ENST00000514987 PRAMEF14Q5SWL7 426 aa14.27□□□□□ -0.12
NUP54-217ENST00000514987 CATSPEREQ5SY80 951 aa14.27□□□□□ -0.12
NUP54-217ENST00000514987 PRAMEF13Q5VWM6 474 aa14.27□□□□□ -0.12
NUP54-217ENST00000514987 FAM46CQ5VWP2 391 aa14.27□□□□□ -0.12
NUP54-217ENST00000514987 GTF2IRD2BQ6EKJ0 949 aa14.27□□□□□ -0.12
NUP54-217ENST00000514987 FAHD1Q6P587 224 aa14.27□□□□□ -0.12
NUP54-217ENST00000514987 CHST15Q7LFX5 561 aaPredicted RBP14.27□□□□□ -0.12
NUP54-217ENST00000514987 GTF2IRD2Q86UP8 949 aa14.27□□□□□ -0.12
NUP54-217ENST00000514987 PDZD3Q86UT5 571 aa14.27□□□□□ -0.12
NUP54-217ENST00000514987 TSPYL5Q86VY4 417 aaPredicted RBP14.27□□□□□ -0.12
NUP54-217ENST00000514987 CYP4Z1Q86W10 505 aa14.27□□□□□ -0.12
NUP54-217ENST00000514987 OXR1Q8N573 874 aa14.27□□□□□ -0.12
NUP54-217ENST00000514987 OR52N2Q8NGI0 321 aa14.27□□□□□ -0.12
NUP54-217ENST00000514987 C16orf78Q8WTQ4 265 aa14.27□□□□□ -0.12
NUP54-217ENST00000514987 SUSD6Q92537 303 aa14.27□□□□□ -0.12
NUP54-217ENST00000514987 SMARCD2Q92925 531 aa14.27□□□□□ -0.12
NUP54-217ENST00000514987 MUL1Q969V5 352 aa14.27□□□□□ -0.12
NUP54-217ENST00000514987 RSPRY1Q96DX4 576 aa14.27□□□□□ -0.12
NUP54-217ENST00000514987 PCBD2Q9H0N5 130 aa14.27□□□□□ -0.12
NUP54-217ENST00000514987 CCNB1IP1Q9NPC3 277 aa14.27□□□□□ -0.12
NUP54-217ENST00000514987 ETAA1Q9NY74 926 aa14.27□□□□□ -0.12
NUP54-217ENST00000514987 PDP1Q9P0J1 537 aaPredicted RBP14.27□□□□□ -0.12
NUP54-217ENST00000514987 ERVK-11Q9UQG0 969 aa14.27□□□□□ -0.12
NUP54-217ENST00000514987 KIAA1549LQ6ZVL6 1849 aa14.27□□□□□ -0.13
NUP54-217ENST00000514987 LRRK1Q38SD2 2015 aa14.27□□□□□ -0.13
NUP54-217ENST00000514987 ANKRD33BA6NCL7 494 aa14.26□□□□□ -0.13
NUP54-217ENST00000514987 K7ESM1 405 aa14.26□□□□□ -0.13
NUP54-217ENST00000514987 KRT75O95678 551 aa14.26□□□□□ -0.13
NUP54-217ENST00000514987 ANGPTL1O95841 491 aa14.26□□□□□ -0.13
NUP54-217ENST00000514987 ITGA2P17301 1181 aa14.26□□□□□ -0.13
NUP54-217ENST00000514987 VIPR2P41587 438 aa14.26□□□□□ -0.13
NUP54-217ENST00000514987 SLC6A11P48066 632 aa14.26□□□□□ -0.13
NUP54-217ENST00000514987 SELENOWP63302 87 aa14.26□□□□□ -0.13
NUP54-217ENST00000514987 C2orf80Q0P641 193 aa14.26□□□□□ -0.13
NUP54-217ENST00000514987 PPP1R8Q12972 351 aaKnown RBP14.26□□□□□ -0.13
NUP54-217ENST00000514987 CAMK2GQ13555 558 aaPredicted RBP14.26□□□□□ -0.13
NUP54-217ENST00000514987 ZNF234Q14588 700 aa14.26□□□□□ -0.13
NUP54-217ENST00000514987 SF1Q15637 639 aaKnown RBP14.26□□□□□ -0.13
NUP54-217ENST00000514987 GCNT6Q5T4J0 391 aa14.26□□□□□ -0.13
NUP54-217ENST00000514987 KIAA1614Q5VZ46 1190 aa14.26□□□□□ -0.13
NUP54-217ENST00000514987 FAM71E1Q6IPT2 247 aa14.26□□□□□ -0.13
NUP54-217ENST00000514987 CCDC80Q76M96 950 aa14.26□□□□□ -0.13
NUP54-217ENST00000514987 CEP68Q76N32 757 aa14.26□□□□□ -0.13
NUP54-217ENST00000514987 ARMCX6Q7L4S7 300 aa14.26□□□□□ -0.13
NUP54-217ENST00000514987 VTCN1Q7Z7D3 282 aa14.26□□□□□ -0.13
NUP54-217ENST00000514987 TRIM74Q86UV6 250 aa14.26□□□□□ -0.13
NUP54-217ENST00000514987 ZNF547Q8IVP9 402 aa14.26□□□□□ -0.13
NUP54-217ENST00000514987 DCUN1D3Q8IWE4 304 aa14.26□□□□□ -0.13
NUP54-217ENST00000514987 OR10Q1Q8NGQ4 319 aa14.26□□□□□ -0.13
NUP54-217ENST00000514987 COX14Q96I36 57 aa14.26□□□□□ -0.13
NUP54-217ENST00000514987 TPD52L3Q96J77 140 aa14.26□□□□□ -0.13
NUP54-217ENST00000514987 C7orf34Q96L11 122 aa14.26□□□□□ -0.13
NUP54-217ENST00000514987 ASB16Q96NS5 453 aa14.26□□□□□ -0.13
NUP54-217ENST00000514987 SAMD11Q96NU1 681 aa14.26□□□□□ -0.13
NUP54-217ENST00000514987 ZDHHC5Q9C0B5 715 aa14.26□□□□□ -0.13
NUP54-217ENST00000514987 PITHD1Q9GZP4 211 aaPredicted RBP14.26□□□□□ -0.13
NUP54-217ENST00000514987 LHPPQ9H008 270 aa14.26□□□□□ -0.13
NUP54-217ENST00000514987 OR52A5Q9H2C5 316 aa14.26□□□□□ -0.13
NUP54-217ENST00000514987 RIBC2Q9H4K1 309 aa14.26□□□□□ -0.13
NUP54-217ENST00000514987 TMEM38AQ9H6F2 299 aa14.26□□□□□ -0.13
NUP54-217ENST00000514987 PELI2Q9HAT8 420 aa14.26□□□□□ -0.13
NUP54-217ENST00000514987 KRT84Q9NSB2 600 aa14.26□□□□□ -0.13
NUP54-217ENST00000514987 PSME2Q9UL46 239 aa14.26□□□□□ -0.13
NUP54-217ENST00000514987 EXO1Q9UQ84 846 aaKnown RBP14.26□□□□□ -0.13
NUP54-217ENST00000514987 GMPPBQ9Y5P6 360 aa14.26□□□□□ -0.13
NUP54-217ENST00000514987 PCM1Q15154 2024 aa14.26□□□□□ -0.13
NUP54-217ENST00000514987 A0A1B0GVG6 124 aa14.26□□□□□ -0.13
NUP54-217ENST00000514987 ADAMDEC1O15204 470 aa14.26□□□□□ -0.13
NUP54-217ENST00000514987 SEMA3DO95025 777 aa14.26□□□□□ -0.13
NUP54-217ENST00000514987 HLA-EP13747 358 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms