RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 MUL1Q969V5 352 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 ZBED6CLQ96FA7 236 aaPredicted RBP8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 YIPF2Q9BWQ6 316 aa8.13□□□□□ -1.11
LIMCH1-216ENST00000512820 FAM155AB1AL88 458 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 OR1F1O43749 312 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 TLX2O43763 284 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 CXCL14O95715 111 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 LAMP1P11279 417 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 PFKLP17858 780 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 CD83Q01151 205 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 SDE2Q6IQ49 451 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 TICAM1Q8IUC6 712 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 OR8D1Q8WZ84 308 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 RAD51AP1Q96B01 352 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 TMEM80Q96HE8 168 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 SLC35G5Q96KT7 338 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 PHOX2BQ99453 314 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 CPNE5Q9HCH3 593 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 THG1LQ9NWX6 298 aaKnown RBP8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 DKK3Q9UBP4 350 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 CCL16O15467 120 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 CKMT1AP12532 417 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 CD247P20963 164 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 CD40LGP29965 261 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 SLC6A4P31645 630 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 PIK3CBP42338 1070 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 RGS8P57771 180 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 MAD2L1BPQ15013 274 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 ANGPT1Q15389 498 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 UGT3A2Q3SY77 523 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 ARMC6Q6NXE6 501 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 B3GNT8Q7Z7M8 397 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 GALNT12Q8IXK2 581 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 SIX5Q8N196 739 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 ZNF548Q8NEK5 533 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 TRPV1Q8NER1 839 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 ZNF461Q8TAF7 563 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 BPIFB1Q8TDL5 484 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 ADAMTS15Q8TE58 950 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 OVCA2Q8WZ82 227 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 SCAMP4Q969E2 229 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 RFKQ969G6 155 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 MAL2Q969L2 176 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 CNDP2Q96KP4 475 aaKnown RBP8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 BARD1Q99728 777 aaKnown RBP8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 CCM2Q9BSQ5 444 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 REEP4Q9H6H4 257 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 IL26Q9NPH9 171 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 IMP3Q9NV31 184 aaKnown RBP8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 MRPL39Q9NYK5 338 aaKnown RBP8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 CLEC4AQ9UMR7 237 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 GTF2A1LQ9UNN4 478 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 ERVK-11Q9UQG0 969 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 ZNF780BQ9Y6R6 833 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 COL5A3P25940 1745 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 ORC5O43913 435 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 SEC14L2O76054 403 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 SLC2A2P11168 524 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 ZXDBP98169 803 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 ZNF763Q0D2J5 394 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 FCHO2Q0JRZ9 810 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 GRSF1Q12849 480 aaKnown RBP eCLIP8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 KCNC3Q14003 757 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 ARSIQ5FYB1 569 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 RNASE12Q5GAN4 147 aaKnown RBP8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 RTP2Q5QGT7 225 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 C22orf39Q6P5X5 142 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 IFNL1Q8IU54 200 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 SLC5A8Q8N695 610 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 TCEANCQ8N8B7 351 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 OR6Q1Q8NGQ2 317 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 PIGXQ8TBF5 258 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 C11orf24Q96F05 449 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 PTPN18Q99952 460 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 RTP3Q9BQQ7 232 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 SYT17Q9BSW7 474 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 ZSCAN5AQ9BUG6 496 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 TRPV5Q9NQA5 729 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 WDR70Q9NW82 654 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 HTR3EA5X5Y0 456 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 C2orf78A6NCI8 922 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 OR6C70A6NIJ9 312 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 I6L893 689 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 DYRK3O43781 588 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 GALTP07902 379 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 YES1P07947 543 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 ITGAMP11215 1152 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 GJA1P17302 382 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 RPS3P23396 243 aaKnown RBP eCLIP8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 CCND3P30281 292 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 TLX1P31314 330 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 DOC2AQ14183 400 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 TCEA2Q15560 299 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 C11orf88Q6PI97 169 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 MSANTD1Q6ZTZ1 278 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 Q6ZVL8 140 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 AUTS2Q8WXX7 1259 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 TMEM175Q9BSA9 504 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 ACPTQ9BZG2 426 aa8.12□□□□□ -1.11
LIMCH1-216ENST00000512820 CLMPQ9H6B4 373 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms