RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 KAT8Q9H7Z6 458 aaKnown RBP12.73□□□□□ -0.37
PTPRF-215ENST00000496447 LYARQ9NX58 379 aaKnown RBP12.73□□□□□ -0.37
PTPRF-215ENST00000496447 PDE10AQ9Y233 779 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 RPL36Q9Y3U8 105 aaKnown RBP12.73□□□□□ -0.37
PTPRF-215ENST00000496447 XRN1Q8IZH2 1706 aaKnown RBP12.73□□□□□ -0.37
PTPRF-215ENST00000496447 SH3PXD2BA1X283 911 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 ZNF879B4DU55 563 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 DLX3O60479 287 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 HNF1BP35680 557 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 ALDH3A2P51648 485 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 TXNL4AP83876 142 aaKnown RBP12.73□□□□□ -0.37
PTPRF-215ENST00000496447 SOX4Q06945 474 aaPredicted RBP12.73□□□□□ -0.37
PTPRF-215ENST00000496447 PTPRCAPQ14761 206 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 SLCO2A1Q92959 643 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 GPR22Q99680 433 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 BRD7Q9NPI1 651 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 TMLHEQ9NVH6 421 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 SLC7A8Q9UHI5 535 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 RNF11Q9Y3C5 154 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 TACSTD2P09758 323 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 CREB1P16220 341 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 VSX2P58304 361 aaPredicted RBP12.73□□□□□ -0.37
PTPRF-215ENST00000496447 PRPF38BQ5VTL8 546 aaKnown RBP12.73□□□□□ -0.37
PTPRF-215ENST00000496447 CEACAM20Q6UY09 585 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 ZNF676Q8N7Q3 588 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 DHRS1Q96LJ7 313 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 ASPNQ9BXN1 380 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 NSUN3Q9H649 340 aaKnown RBP12.73□□□□□ -0.37
PTPRF-215ENST00000496447 C8orf33Q9H7E9 229 aaPredicted RBP12.73□□□□□ -0.37
PTPRF-215ENST00000496447 PLCL2Q9UPR0 1127 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 A0A0X1KG70 313 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 A0A1W2PQU0 124 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 TRBC2A0A5B9 178 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 ITM2AO43736 263 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 ORC5O43913 435 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 AIREO43918 545 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 RFPL2O75678 378 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 IFNA7P01567 189 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 GBAP04062 536 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 ZNF806P0C7X5 589 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 FOSL2P15408 326 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 GBX2P52951 348 aaPredicted RBP12.73□□□□□ -0.37
PTPRF-215ENST00000496447 MADCAM1Q13477 382 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 CRTC2Q53ET0 693 aaPredicted RBP12.73□□□□□ -0.37
PTPRF-215ENST00000496447 PQLC3Q8N755 202 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 PEBP4Q96S96 227 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 XKR8Q9H6D3 395 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 PTBP2Q9UKA9 531 aaKnown RBP12.73□□□□□ -0.37
PTPRF-215ENST00000496447 HYKKA2RU49 373 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 ZNF840PA6NDX5 716 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 MUSKO15146 869 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 H1F0P07305 194 aaKnown RBP12.73□□□□□ -0.37
PTPRF-215ENST00000496447 MAP3K8P41279 467 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 DGKQP52824 942 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 BNIP3Q12983 259 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 CHAF1BQ13112 559 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 CBFBQ13951 182 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 DHCR24Q15392 516 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 CYP27C1Q4G0S4 372 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 IQCCQ4KMZ1 466 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 KLHL26Q53HC5 615 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 TRAM1L1Q8N609 369 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 PACRGLQ8N7B6 248 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 OR2L3Q8NG85 312 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 OR10T2Q8NGX3 314 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 NFKBIDQ8NI38 313 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 ZNF420Q8TAQ5 688 aaPredicted RBP12.73□□□□□ -0.37
PTPRF-215ENST00000496447 SCAMP4Q969E2 229 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 KIAA1191Q96A73 305 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 LRRC58Q96CX6 371 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 CGREF1Q99674 301 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 CD244Q9BZW8 370 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 COQ10BQ9H8M1 238 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 RABL2AQ9UBK7 228 aaPredicted RBP12.73□□□□□ -0.37
PTPRF-215ENST00000496447 PCDHGA2Q9Y5H1 932 aa12.73□□□□□ -0.37
PTPRF-215ENST00000496447 ISPDA4D126 451 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 A6NHS1 94 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 EPOP01588 193 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 PGRP06401 933 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 OXTRP30559 389 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 CDK6Q00534 326 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 ID2Q02363 134 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 LGI4Q8N135 537 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 IL22RA1Q8N6P7 574 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 PKP4Q99569 1192 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 CST11Q9H112 138 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 FAIMQ9NVQ4 179 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 MKLN1Q9UL63 735 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 BACE2Q9Y5Z0 518 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 IL33O95760 270 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 GSTM3P21266 225 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 DSC3Q14574 896 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 ZNF267Q14586 743 aaPredicted RBP12.72□□□□□ -0.37
PTPRF-215ENST00000496447 LDLRAD1Q5T700 205 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 GLYATL1Q969I3 302 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 BIRC8Q96P09 236 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 C17orf62Q9BQA9 187 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 OR5K4A6NMS3 321 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 BOLA2-SMG1P6H3BVE0 249 aa12.72□□□□□ -0.37
PTPRF-215ENST00000496447 TBX1O43435 398 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms