RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 ZNF860A6NHJ4 632 aa13.09□□□□□ -0.31
VARS-227ENST00000489979 MAGEB17A8MXT2 336 aa13.09□□□□□ -0.31
VARS-227ENST00000489979 PFDN6O15212 129 aa13.09□□□□□ -0.31
VARS-227ENST00000489979 IPO7O95373 1038 aaKnown RBP13.09□□□□□ -0.31
VARS-227ENST00000489979 ZSCAN5DPP0CG00 497 aa13.09□□□□□ -0.31
VARS-227ENST00000489979 TFEBP19484 476 aa13.09□□□□□ -0.31
VARS-227ENST00000489979 IMPA1P29218 277 aa13.09□□□□□ -0.31
VARS-227ENST00000489979 CHRNB4P30926 498 aa13.09□□□□□ -0.31
VARS-227ENST00000489979 NPY2RP49146 381 aa13.09□□□□□ -0.31
VARS-227ENST00000489979 ITGA8P53708 1063 aa13.09□□□□□ -0.31
VARS-227ENST00000489979 ADARP55265 1226 aaKnown RBP13.09□□□□□ -0.31
VARS-227ENST00000489979 MLF1P58340 268 aa13.09□□□□□ -0.31
VARS-227ENST00000489979 SNX1Q13596 522 aa13.09□□□□□ -0.31
VARS-227ENST00000489979 CES4AQ5XG92 561 aa13.09□□□□□ -0.31
VARS-227ENST00000489979 CCDC71Q8IV32 467 aaPredicted RBP13.09□□□□□ -0.31
VARS-227ENST00000489979 CCDC89Q8N998 374 aa13.09□□□□□ -0.31
VARS-227ENST00000489979 POGLUT1Q8NBL1 392 aa13.09□□□□□ -0.31
VARS-227ENST00000489979 CAMKVQ8NCB2 501 aa13.09□□□□□ -0.31
VARS-227ENST00000489979 ACRBPQ8NEB7 543 aa13.09□□□□□ -0.31
VARS-227ENST00000489979 OR5T3Q8NGG3 340 aa13.09□□□□□ -0.31
VARS-227ENST00000489979 RND1Q92730 232 aa13.09□□□□□ -0.31
VARS-227ENST00000489979 TMEM125Q96AQ2 219 aa13.09□□□□□ -0.31
VARS-227ENST00000489979 TM4SF19Q96DZ7 209 aa13.09□□□□□ -0.31
VARS-227ENST00000489979 THAP11Q96EK4 314 aa13.09□□□□□ -0.31
VARS-227ENST00000489979 OR1F2PQ96R84 312 aa13.09□□□□□ -0.31
VARS-227ENST00000489979 TRIM45Q9H8W5 580 aaPredicted RBP13.09□□□□□ -0.31
VARS-227ENST00000489979 KCNN3Q9UGI6 736 aa13.09□□□□□ -0.31
VARS-227ENST00000489979 NAALAD2Q9Y3Q0 740 aa13.09□□□□□ -0.31
VARS-227ENST00000489979 ABCA2Q9BZC7 2435 aa13.09□□□□□ -0.31
VARS-227ENST00000489979 USP27XA6NNY8 438 aa13.08□□□□□ -0.32
VARS-227ENST00000489979 HS6ST1O60243 411 aa13.08□□□□□ -0.32
VARS-227ENST00000489979 HOXD4P09016 255 aaPredicted RBP13.08□□□□□ -0.32
VARS-227ENST00000489979 IL10P22301 178 aa13.08□□□□□ -0.32
VARS-227ENST00000489979 HRH2P25021 359 aa13.08□□□□□ -0.32
VARS-227ENST00000489979 MGAT1P26572 445 aa13.08□□□□□ -0.32
VARS-227ENST00000489979 TRHRP34981 398 aaPredicted RBP13.08□□□□□ -0.32
VARS-227ENST00000489979 RPL22P35268 128 aaKnown RBP13.08□□□□□ -0.32
VARS-227ENST00000489979 COILP38432 576 aaPredicted RBP13.08□□□□□ -0.32
VARS-227ENST00000489979 HLCSP50747 726 aa13.08□□□□□ -0.32
VARS-227ENST00000489979 CLCN7P51798 805 aa13.08□□□□□ -0.32
VARS-227ENST00000489979 MYBPHQ13203 477 aa13.08□□□□□ -0.32
VARS-227ENST00000489979 CUL1Q13616 776 aa13.08□□□□□ -0.32
VARS-227ENST00000489979 TTLL9Q3SXZ7 439 aa13.08□□□□□ -0.32
VARS-227ENST00000489979 ASPGQ86U10 573 aa13.08□□□□□ -0.32
VARS-227ENST00000489979 SLC26A11Q86WA9 606 aa13.08□□□□□ -0.32
VARS-227ENST00000489979 TGIF2LYQ8IUE0 185 aa13.08□□□□□ -0.32
VARS-227ENST00000489979 SULF2Q8IWU5 870 aa13.08□□□□□ -0.32
VARS-227ENST00000489979 SYCE1Q8N0S2 351 aa13.08□□□□□ -0.32
VARS-227ENST00000489979 RPRMLQ8N4K4 120 aa13.08□□□□□ -0.32
VARS-227ENST00000489979 PRELID2Q8N945 189 aa13.08□□□□□ -0.32
VARS-227ENST00000489979 GIMAP7Q8NHV1 300 aa13.08□□□□□ -0.32
VARS-227ENST00000489979 SLC13A3Q8WWT9 602 aa13.08□□□□□ -0.32
VARS-227ENST00000489979 ASB11Q8WXH4 323 aa13.08□□□□□ -0.32
VARS-227ENST00000489979 PANX2Q96RD6 677 aa13.08□□□□□ -0.32
VARS-227ENST00000489979 TCF12Q99081 682 aa13.08□□□□□ -0.32
VARS-227ENST00000489979 KIFC1Q9BW19 673 aa13.08□□□□□ -0.32
VARS-227ENST00000489979 FRMD8P1Q9BZ68 369 aaPredicted RBP13.08□□□□□ -0.32
VARS-227ENST00000489979 TP63Q9H3D4 680 aaPredicted RBP13.08□□□□□ -0.32
VARS-227ENST00000489979 CCDC177Q9NQR7 707 aaPredicted RBP13.08□□□□□ -0.32
VARS-227ENST00000489979 EIF2B3Q9NR50 452 aaKnown RBP13.08□□□□□ -0.32
VARS-227ENST00000489979 SYBUQ9NX95 663 aa13.08□□□□□ -0.32
VARS-227ENST00000489979 SH2B3Q9UQQ2 575 aa13.08□□□□□ -0.32
VARS-227ENST00000489979 DRG1Q9Y295 367 aaKnown RBP13.08□□□□□ -0.32
VARS-227ENST00000489979 KLF13Q9Y2Y9 288 aaPredicted RBP13.08□□□□□ -0.32
VARS-227ENST00000489979 FAM221AA4D161 298 aa13.07□□□□□ -0.32
VARS-227ENST00000489979 KLRC4-KLRK1H3BQV0 150 aa13.07□□□□□ -0.32
VARS-227ENST00000489979 GFYI3L273 518 aa13.07□□□□□ -0.32
VARS-227ENST00000489979 ZBTB14O43829 449 aa13.07□□□□□ -0.32
VARS-227ENST00000489979 LCMT2O60294 686 aaKnown RBP13.07□□□□□ -0.32
VARS-227ENST00000489979 PRMT3O60678 531 aa13.07□□□□□ -0.32
VARS-227ENST00000489979 PDE9AO76083 593 aa13.07□□□□□ -0.32
VARS-227ENST00000489979 ZWINTO95229 277 aa13.07□□□□□ -0.32
VARS-227ENST00000489979 FHP07954 510 aa13.07□□□□□ -0.32
VARS-227ENST00000489979 OGNP20774 298 aaKnown RBP13.07□□□□□ -0.32
VARS-227ENST00000489979 SKIV2L2P42285 1042 aaKnown RBP13.07□□□□□ -0.32
VARS-227ENST00000489979 TBPL1P62380 186 aa13.07□□□□□ -0.32
VARS-227ENST00000489979 MPP1Q00013 466 aa13.07□□□□□ -0.32
VARS-227ENST00000489979 PMPCAQ10713 525 aa13.07□□□□□ -0.32
VARS-227ENST00000489979 RPS6KA1Q15418 735 aa13.07□□□□□ -0.32
VARS-227ENST00000489979 CMPK2Q5EBM0 449 aa13.07□□□□□ -0.32
VARS-227ENST00000489979 RAD9BQ6WBX8 426 aa13.07□□□□□ -0.32
VARS-227ENST00000489979 CYHR1Q6ZMK1 362 aa13.07□□□□□ -0.32
VARS-227ENST00000489979 CENPUQ71F23 418 aa13.07□□□□□ -0.32
VARS-227ENST00000489979 CYP4X1Q8N118 509 aa13.07□□□□□ -0.32
VARS-227ENST00000489979 TBC1D20Q96BZ9 403 aa13.07□□□□□ -0.32
VARS-227ENST00000489979 FOXC2Q99958 501 aa13.07□□□□□ -0.32
VARS-227ENST00000489979 CXXC4Q9H2H0 198 aa13.07□□□□□ -0.32
VARS-227ENST00000489979 SLC22A7Q9Y694 548 aa13.07□□□□□ -0.32
VARS-227ENST00000489979 FCHO1O14526 889 aa13.06□□□□□ -0.32
VARS-227ENST00000489979 PEX1O43933 1283 aa13.06□□□□□ -0.32
VARS-227ENST00000489979 B4GALT2O60909 372 aa13.06□□□□□ -0.32
VARS-227ENST00000489979 DNAJB6O75190 326 aa13.06□□□□□ -0.32
VARS-227ENST00000489979 F7P08709 466 aaPredicted RBP13.06□□□□□ -0.32
VARS-227ENST00000489979 MPC1LP0DKB6 136 aa13.06□□□□□ -0.32
VARS-227ENST00000489979 KLK2P20151 261 aa13.06□□□□□ -0.32
VARS-227ENST00000489979 NUP107P57740 925 aa13.06□□□□□ -0.32
VARS-227ENST00000489979 OLR1P78380 273 aa13.06□□□□□ -0.32
VARS-227ENST00000489979 BASP1P80723 227 aaKnown RBP13.06□□□□□ -0.32
VARS-227ENST00000489979 EMC4Q5J8M3 183 aa13.06□□□□□ -0.32
VARS-227ENST00000489979 CAPN13Q6MZZ7 669 aaPredicted RBP13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms