RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 POLR3CQ9BUI4 534 aaPredicted RBP3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 CDK19Q9BWU1 502 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 NFKBIZQ9BYH8 718 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 SPRY4Q9C004 299 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 LHPPQ9H008 270 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 DDX47Q9H0S4 455 aaKnown RBP3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 VCX2Q9H322 139 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 DPAGT1Q9H3H5 408 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 PPP1R3EQ9H7J1 279 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 MAP6D1Q9H9H5 199 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 ROPN1Q9HAT0 212 aaPredicted RBP3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 MRPL17Q9NRX2 175 aaKnown RBP3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 ZCCHC3Q9NUD5 404 aaKnown RBP3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 CISD1Q9NZ45 108 aaKnown RBP3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 RAI14Q9P0K7 980 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 C6orf203Q9P0P8 240 aaPredicted RBP3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 BAIAP2L1Q9UHR4 511 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 PSME2Q9UL46 239 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 CHTOPQ9Y3Y2 248 aaKnown RBP3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 ATG4BQ9Y4P1 393 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 MSH6P52701 1360 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 NCAPD2Q15021 1401 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 ROBO1Q9Y6N7 1651 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 KNDC1Q76NI1 1749 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 ARHGEF28Q8N1W1 1705 aaKnown RBP3□□□□□ -1.93
DEPDC1-204ENST00000489862 TCF20Q9UGU0 1960 aaKnown RBP3□□□□□ -1.93
DEPDC1-204ENST00000489862 KIAA1210Q9ULL0 1709 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 COL16A1Q07092 1604 aaPredicted RBP3□□□□□ -1.93
DEPDC1-204ENST00000489862 TULP4Q9NRJ4 1543 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 RALGAPBQ86X10 1494 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 PXDNQ92626 1479 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 DCCP43146 1447 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 TRBV5-7A0A0A0MS05 114 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 TYW5A2RUC4 315 aaKnown RBP3□□□□□ -1.93
DEPDC1-204ENST00000489862 TMEM89A2RUT3 159 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 TMEM247A6NEH6 219 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 FAM47DPA6NHR8 397 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 ZNF716A6NP11 495 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 KBTBD13C9JR72 458 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 E9PBE3 544 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 J3QR06 171 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 M0QZ24 198 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 MDM4O15151 490 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 MSI1O43347 362 aaKnown RBP3□□□□□ -1.93
DEPDC1-204ENST00000489862 CACNG3O60359 315 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 CTAG2O75638 210 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 STBD1O95210 358 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 PGLSO95336 258 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 SERPINA3P01011 423 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 HLA-DQA2P01906 255 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 KRT8P05787 483 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 UQCRFS1P1P0C7P4 283 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 ZNF735P0CB33 412 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 SPP1P10451 314 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 PCMT1P22061 227 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 PIGAP37287 484 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 SLC6A12P48065 614 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 LHX1P48742 406 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 PRRX1P54821 245 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 TSTA3Q13630 321 aaPredicted RBP3□□□□□ -1.93
DEPDC1-204ENST00000489862 ZMYND11Q15326 602 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 KRT24Q2M2I5 525 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 SPATA46Q5T0L3 261 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 GCNT6Q5T4J0 391 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 ZNF772Q68DY9 489 aaPredicted RBP3□□□□□ -1.93
DEPDC1-204ENST00000489862 ZNF324BQ6AW86 544 aaPredicted RBP3□□□□□ -1.93
DEPDC1-204ENST00000489862 PMF1Q6P1K2 205 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 ZNF704Q6ZNC4 412 aaPredicted RBP3□□□□□ -1.93
DEPDC1-204ENST00000489862 TRILQ7L0X0 811 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 CCDC190Q86UF4 302 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 LONP2Q86WA8 852 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 NRROSQ86YC3 692 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 LAX1Q8IWV1 398 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 C1orf87Q8N0U7 546 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 BBS5Q8N3I7 341 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 IQCF1Q8N6M8 205 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 RNF148Q8N7C7 305 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 ZNF321PQ8N8H1 164 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 BEST2Q8NFU1 509 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 OR4A16Q8NH70 328 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 C14orf79Q96F83 325 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 ATG101Q9BSB4 218 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 NTMT1Q9BV86 223 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 SF3B5Q9BWJ5 86 aaKnown RBP3□□□□□ -1.93
DEPDC1-204ENST00000489862 UBQLN3Q9H347 655 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 VCPKMTQ9H867 229 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 HINT3Q9NQE9 182 aaKnown RBP3□□□□□ -1.93
DEPDC1-204ENST00000489862 TBC1D7Q9P0N9 293 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 OR14J1Q9UGF5 321 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 SUN2Q9UH99 717 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 TNNQ9UQP3 1299 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 NIP7Q9Y221 180 aaKnown RBP eCLIP3□□□□□ -1.93
DEPDC1-204ENST00000489862 FOXA2Q9Y261 457 aaPredicted RBP3□□□□□ -1.93
DEPDC1-204ENST00000489862 NFE2L3Q9Y4A8 694 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 RNF115Q9Y4L5 304 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 STON1Q9Y6Q2 735 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 SPACA6W5XKT8 324 aa3□□□□□ -1.93
DEPDC1-204ENST00000489862 TRIP12Q14669 1992 aaPredicted RBP2.99□□□□□ -1.93
DEPDC1-204ENST00000489862 LRP6O75581 1613 aa2.99□□□□□ -1.93
DEPDC1-204ENST00000489862 CDC42BPGQ6DT37 1551 aa2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms