RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 ZXDCQ2QGD7 858 aaPredicted RBP11.66□□□□□ -0.54
CPSF3-204ENST00000489403 LRRC8EQ6NSJ5 796 aa11.66□□□□□ -0.54
CPSF3-204ENST00000489403 UGT3A1Q6NUS8 523 aa11.66□□□□□ -0.54
CPSF3-204ENST00000489403 XKRXQ6PP77 449 aa11.66□□□□□ -0.54
CPSF3-204ENST00000489403 GALNTL5Q7Z4T8 443 aa11.66□□□□□ -0.54
CPSF3-204ENST00000489403 RASGEF1CQ8N431 466 aa11.66□□□□□ -0.54
CPSF3-204ENST00000489403 AFAP1L2Q8N4X5 818 aa11.66□□□□□ -0.54
CPSF3-204ENST00000489403 NAT8LQ8N9F0 302 aa11.66□□□□□ -0.54
CPSF3-204ENST00000489403 MFSD9Q8NBP5 474 aa11.66□□□□□ -0.54
CPSF3-204ENST00000489403 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.66□□□□□ -0.54
CPSF3-204ENST00000489403 C2CD4AQ8NCU7 369 aaPredicted RBP11.66□□□□□ -0.54
CPSF3-204ENST00000489403 PLPP5Q8NEB5 264 aa11.66□□□□□ -0.54
CPSF3-204ENST00000489403 MAGOHBQ96A72 148 aaKnown RBP11.66□□□□□ -0.54
CPSF3-204ENST00000489403 ALKBH8Q96BT7 664 aaKnown RBP11.66□□□□□ -0.54
CPSF3-204ENST00000489403 MAGED4Q96JG8 741 aa11.66□□□□□ -0.54
CPSF3-204ENST00000489403 OR1F2PQ96R84 312 aa11.66□□□□□ -0.54
CPSF3-204ENST00000489403 LPAR4Q99677 370 aa11.66□□□□□ -0.54
CPSF3-204ENST00000489403 TRIM8Q9BZR9 551 aa11.66□□□□□ -0.54
CPSF3-204ENST00000489403 TSPAN10Q9H1Z9 355 aaPredicted RBP11.66□□□□□ -0.54
CPSF3-204ENST00000489403 PARVBQ9HBI1 364 aa11.66□□□□□ -0.54
CPSF3-204ENST00000489403 SLC22A7Q9Y694 548 aa11.66□□□□□ -0.54
CPSF3-204ENST00000489403 PDZD2O15018 2839 aa11.65□□□□□ -0.54
CPSF3-204ENST00000489403 MAGEB17A8MXT2 336 aa11.65□□□□□ -0.54
CPSF3-204ENST00000489403 NPIPA5E9PKD4 350 aa11.65□□□□□ -0.54
CPSF3-204ENST00000489403 NDUFS4O43181 175 aa11.65□□□□□ -0.54
CPSF3-204ENST00000489403 DNAJB6O75190 326 aa11.65□□□□□ -0.54
CPSF3-204ENST00000489403 NEURL1O76050 574 aa11.65□□□□□ -0.54
CPSF3-204ENST00000489403 ESRRAP11474 423 aaPredicted RBP11.65□□□□□ -0.54
CPSF3-204ENST00000489403 CD46P15529 392 aa11.65□□□□□ -0.54
CPSF3-204ENST00000489403 NPPBP16860 134 aa11.65□□□□□ -0.54
CPSF3-204ENST00000489403 AGAP20933 346 aa11.65□□□□□ -0.54
CPSF3-204ENST00000489403 IL10P22301 178 aa11.65□□□□□ -0.54
CPSF3-204ENST00000489403 GRK3P35626 688 aa11.65□□□□□ -0.54
CPSF3-204ENST00000489403 RGS4P49798 205 aa11.65□□□□□ -0.54
CPSF3-204ENST00000489403 OR4D2P58180 307 aa11.65□□□□□ -0.54
CPSF3-204ENST00000489403 MEF2AQ02078 507 aaPredicted RBP11.65□□□□□ -0.54
CPSF3-204ENST00000489403 OC90Q02509 493 aaPredicted RBP11.65□□□□□ -0.54
CPSF3-204ENST00000489403 DHX9Q08211 1270 aaKnown RBP11.65□□□□□ -0.54
CPSF3-204ENST00000489403 CYP1B1Q16678 543 aa11.65□□□□□ -0.54
CPSF3-204ENST00000489403 KRTCAP3Q53RY4 240 aa11.65□□□□□ -0.54
CPSF3-204ENST00000489403 RBM20Q5T481 1227 aaKnown RBP11.65□□□□□ -0.54
CPSF3-204ENST00000489403 CCDC137Q6PK04 289 aaKnown RBP11.65□□□□□ -0.54
CPSF3-204ENST00000489403 PAQR3Q6TCH7 311 aa11.65□□□□□ -0.54
CPSF3-204ENST00000489403 NCCRP1Q6ZVX7 275 aaPredicted RBP11.65□□□□□ -0.54
CPSF3-204ENST00000489403 SPPL2CQ8IUH8 684 aa11.65□□□□□ -0.54
CPSF3-204ENST00000489403 SIAH3Q8IW03 269 aa11.65□□□□□ -0.54
CPSF3-204ENST00000489403 MYO1HQ8N1T3 1032 aa11.65□□□□□ -0.54
CPSF3-204ENST00000489403 SLC5A8Q8N695 610 aa11.65□□□□□ -0.54
CPSF3-204ENST00000489403 TMEM178AQ8NBL3 297 aa11.65□□□□□ -0.54
CPSF3-204ENST00000489403 ZNF740Q8NDX6 193 aa11.65□□□□□ -0.54
CPSF3-204ENST00000489403 ABHD11Q8NFV4 315 aa11.65□□□□□ -0.54
CPSF3-204ENST00000489403 ADAMTS18Q8TE60 1221 aa11.65□□□□□ -0.54
CPSF3-204ENST00000489403 PYCR2Q96C36 320 aa11.65□□□□□ -0.54
CPSF3-204ENST00000489403 MS4A14Q96JA4 679 aa11.65□□□□□ -0.54
CPSF3-204ENST00000489403 LURAP1Q96LR2 239 aa11.65□□□□□ -0.54
CPSF3-204ENST00000489403 SARGQ9BW04 601 aa11.65□□□□□ -0.54
CPSF3-204ENST00000489403 FAM129AQ9BZQ8 928 aa11.65□□□□□ -0.54
CPSF3-204ENST00000489403 TAS2R13Q9NYV9 303 aa11.65□□□□□ -0.54
CPSF3-204ENST00000489403 NPIPA1Q9UND3 350 aa11.65□□□□□ -0.54
CPSF3-204ENST00000489403 C19orf84I3L1E1 186 aa11.64□□□□□ -0.55
CPSF3-204ENST00000489403 SLC16A5O15375 505 aa11.64□□□□□ -0.55
CPSF3-204ENST00000489403 ZNHIT1O43257 154 aa11.64□□□□□ -0.55
CPSF3-204ENST00000489403 GALR3O60755 368 aaPredicted RBP11.64□□□□□ -0.55
CPSF3-204ENST00000489403 MLYCDO95822 493 aa11.64□□□□□ -0.55
CPSF3-204ENST00000489403 TSPAN12O95859 305 aa11.64□□□□□ -0.55
CPSF3-204ENST00000489403 B3GALT4O96024 378 aa11.64□□□□□ -0.55
CPSF3-204ENST00000489403 FHP07954 510 aa11.64□□□□□ -0.55
CPSF3-204ENST00000489403 SP1P08047 785 aa11.64□□□□□ -0.55
CPSF3-204ENST00000489403 GABRB3P28472 473 aa11.64□□□□□ -0.55
CPSF3-204ENST00000489403 SMSP52788 366 aa11.64□□□□□ -0.55
CPSF3-204ENST00000489403 CDKN2DP55273 166 aa11.64□□□□□ -0.55
CPSF3-204ENST00000489403 TAS2R50P59544 299 aa11.64□□□□□ -0.55
CPSF3-204ENST00000489403 OLR1P78380 273 aa11.64□□□□□ -0.55
CPSF3-204ENST00000489403 ACTN3Q08043 901 aaPredicted RBP11.64□□□□□ -0.55
CPSF3-204ENST00000489403 CRYMQ14894 314 aa11.64□□□□□ -0.55
CPSF3-204ENST00000489403 HERC3Q15034 1050 aa11.64□□□□□ -0.55
CPSF3-204ENST00000489403 ZNF468Q5VIY5 522 aaPredicted RBP11.64□□□□□ -0.55
CPSF3-204ENST00000489403 SLC25A25Q6KCM7 469 aa11.64□□□□□ -0.55
CPSF3-204ENST00000489403 PNPLA5Q7Z6Z6 429 aaPredicted RBP11.64□□□□□ -0.55
CPSF3-204ENST00000489403 PALM2Q8IXS6 379 aa11.64□□□□□ -0.55
CPSF3-204ENST00000489403 LGI4Q8N135 537 aa11.64□□□□□ -0.55
CPSF3-204ENST00000489403 KIF2BQ8N4N8 673 aa11.64□□□□□ -0.55
CPSF3-204ENST00000489403 FAM98AQ8NCA5 519 aaKnown RBP11.64□□□□□ -0.55
CPSF3-204ENST00000489403 OR4K1Q8NGD4 311 aa11.64□□□□□ -0.55
CPSF3-204ENST00000489403 ELP5Q8TE02 316 aa11.64□□□□□ -0.55
CPSF3-204ENST00000489403 TBC1D20Q96BZ9 403 aa11.64□□□□□ -0.55
CPSF3-204ENST00000489403 LINGO1Q96FE5 620 aa11.64□□□□□ -0.55
CPSF3-204ENST00000489403 OR4K3Q96R72 315 aa11.64□□□□□ -0.55
CPSF3-204ENST00000489403 HAUS8Q9BT25 410 aa11.64□□□□□ -0.55
CPSF3-204ENST00000489403 SPNS1Q9H2V7 528 aa11.64□□□□□ -0.55
CPSF3-204ENST00000489403 CDCP1Q9H5V8 836 aa11.64□□□□□ -0.55
CPSF3-204ENST00000489403 LRFN1Q9P244 771 aa11.64□□□□□ -0.55
CPSF3-204ENST00000489403 MEMO1Q9Y316 297 aa11.64□□□□□ -0.55
CPSF3-204ENST00000489403 TRBC2A0A5B9 178 aa11.63□□□□□ -0.55
CPSF3-204ENST00000489403 NDC80O14777 642 aa11.63□□□□□ -0.55
CPSF3-204ENST00000489403 CHST10O43529 356 aa11.63□□□□□ -0.55
CPSF3-204ENST00000489403 OR1F1O43749 312 aa11.63□□□□□ -0.55
CPSF3-204ENST00000489403 CLDN14O95500 239 aa11.63□□□□□ -0.55
CPSF3-204ENST00000489403 HIST1H2AGP0C0S8 130 aaPredicted RBP11.63□□□□□ -0.55
CPSF3-204ENST00000489403 ALOX12P18054 663 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms