RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 IFT88Q13099 833 aa9.83□□□□□ -0.84
SKA1-204ENST00000488454 STX3Q13277 289 aa9.83□□□□□ -0.84
SKA1-204ENST00000488454 CLN3Q13286 438 aa9.83□□□□□ -0.84
SKA1-204ENST00000488454 PWP1Q13610 501 aa9.83□□□□□ -0.84
SKA1-204ENST00000488454 RCN2Q14257 317 aa9.83□□□□□ -0.84
SKA1-204ENST00000488454 NDUFA9Q16795 377 aa9.83□□□□□ -0.84
SKA1-204ENST00000488454 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.83□□□□□ -0.84
SKA1-204ENST00000488454 ARL13AQ5H913 290 aaPredicted RBP9.83□□□□□ -0.84
SKA1-204ENST00000488454 FRMPD2BQ6IN97 320 aa9.83□□□□□ -0.84
SKA1-204ENST00000488454 ZCCHC23Q6ZST2 131 aa9.83□□□□□ -0.84
SKA1-204ENST00000488454 ERMP1Q7Z2K6 904 aa9.83□□□□□ -0.84
SKA1-204ENST00000488454 OR4N4Q8N0Y3 316 aa9.83□□□□□ -0.84
SKA1-204ENST00000488454 OR1L3Q8NH93 324 aa9.83□□□□□ -0.84
SKA1-204ENST00000488454 METTL6Q8TCB7 284 aa9.83□□□□□ -0.84
SKA1-204ENST00000488454 NXPE2Q96DL1 559 aa9.83□□□□□ -0.84
SKA1-204ENST00000488454 SLC46A1Q96NT5 459 aa9.83□□□□□ -0.84
SKA1-204ENST00000488454 SARGQ9BW04 601 aa9.83□□□□□ -0.84
SKA1-204ENST00000488454 B3GNT4Q9C0J1 378 aa9.83□□□□□ -0.84
SKA1-204ENST00000488454 SPRTNQ9H040 489 aaPredicted RBP9.83□□□□□ -0.84
SKA1-204ENST00000488454 GSTO2Q9H4Y5 243 aa9.83□□□□□ -0.84
SKA1-204ENST00000488454 ELOVL6Q9H5J4 265 aa9.83□□□□□ -0.84
SKA1-204ENST00000488454 APMAPQ9HDC9 416 aa9.83□□□□□ -0.84
SKA1-204ENST00000488454 THSD1Q9NS62 852 aa9.83□□□□□ -0.84
SKA1-204ENST00000488454 TXLNGQ9NUQ3 528 aa9.83□□□□□ -0.84
SKA1-204ENST00000488454 MSRB2Q9Y3D2 182 aa9.83□□□□□ -0.84
SKA1-204ENST00000488454 PCDHGA3Q9Y5H0 932 aa9.83□□□□□ -0.84
SKA1-204ENST00000488454 ANKRD12Q6UB98 2062 aa9.83□□□□□ -0.84
SKA1-204ENST00000488454 HYKKA2RU49 373 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 TMEM114B3SHH9 223 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 H0YIV9 168 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 PPP6CO00743 305 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 NVLO15381 856 aaKnown RBP9.82□□□□□ -0.84
SKA1-204ENST00000488454 NDUFS4O43181 175 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 ZNF749O43361 778 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 HCRTR1O43613 425 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 PRAMEF4O60810 478 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 CLEC3AO75596 197 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 OR4F21O95013 312 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 HSPA4LO95757 839 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 CHEK2O96017 543 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 KRT6AP02538 564 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 KRT6BP04259 564 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 ENO1P06733 434 aaKnown RBP9.82□□□□□ -0.84
SKA1-204ENST00000488454 CHN1P15882 459 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 BGNP21810 368 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 ALAS2P22557 587 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 HMOX2P30519 316 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 GPC1P35052 558 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 GABRA4P48169 554 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 KRT6CP48668 564 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 ERVPABLB-1P60509 514 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 ABCE1P61221 599 aaKnown RBP9.82□□□□□ -0.84
SKA1-204ENST00000488454 STXBP1P61764 594 aaKnown RBP9.82□□□□□ -0.84
SKA1-204ENST00000488454 CYP4F2P78329 520 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 GALNT1Q10472 559 aaPredicted RBP9.82□□□□□ -0.84
SKA1-204ENST00000488454 TRAF3Q13114 568 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 DDX39BQ13838 428 aaKnown RBP9.82□□□□□ -0.84
SKA1-204ENST00000488454 E2F2Q14209 437 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 RTP5Q14D33 572 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 ZRSR2Q15696 482 aaKnown RBP9.82□□□□□ -0.84
SKA1-204ENST00000488454 GGTA1PQ4G0N0 100 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 SGO1Q5FBB7 561 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 C10orf62Q5T681 223 aaPredicted RBP9.82□□□□□ -0.84
SKA1-204ENST00000488454 YOD1Q5VVQ6 348 aaPredicted RBP9.82□□□□□ -0.84
SKA1-204ENST00000488454 PRAMEF9Q5VWM5 478 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 PWWP2BQ6NUJ5 590 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 SYVN1Q86TM6 617 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 LAS2Q8IYD9 372 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 CDYL2Q8N8U2 506 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 OR7G3Q8NG95 312 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 RAB3IL1Q8TBN0 382 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 MTFMTQ96DP5 389 aaKnown RBP9.82□□□□□ -0.84
SKA1-204ENST00000488454 CLIP3Q96DZ5 547 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 PRR11Q96HE9 360 aaPredicted RBP9.82□□□□□ -0.84
SKA1-204ENST00000488454 CENPKQ9BS16 269 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 SHCBP1LQ9BZQ2 653 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 SPNS1Q9H2V7 528 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 RHBGQ9H310 441 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 MANSC1Q9H8J5 431 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 STARD5Q9NSY2 213 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 TRPS1Q9UHF7 1281 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 ANGPTL2Q9UKU9 493 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 ZNF490Q9ULM2 529 aaPredicted RBP9.82□□□□□ -0.84
SKA1-204ENST00000488454 SRPK3Q9UPE1 567 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 B3GALT1Q9Y5Z6 326 aa9.82□□□□□ -0.84
SKA1-204ENST00000488454 A0A1W2PNU3 283 aaPredicted RBP9.81□□□□□ -0.84
SKA1-204ENST00000488454 FFAR3O14843 346 aa9.81□□□□□ -0.84
SKA1-204ENST00000488454 GPR42O15529 346 aa9.81□□□□□ -0.84
SKA1-204ENST00000488454 CPNE3O75131 537 aaKnown RBP9.81□□□□□ -0.84
SKA1-204ENST00000488454 ULK1O75385 1050 aa9.81□□□□□ -0.84
SKA1-204ENST00000488454 NTRK1P04629 796 aa9.81□□□□□ -0.84
SKA1-204ENST00000488454 KLK3P07288 261 aaPredicted RBP9.81□□□□□ -0.84
SKA1-204ENST00000488454 CAPN1P07384 714 aa9.81□□□□□ -0.84
SKA1-204ENST00000488454 SERPINA6P08185 405 aa9.81□□□□□ -0.84
SKA1-204ENST00000488454 CD22P20273 847 aa9.81□□□□□ -0.84
SKA1-204ENST00000488454 PTX3P26022 381 aaPredicted RBP9.81□□□□□ -0.84
SKA1-204ENST00000488454 CD82P27701 267 aa9.81□□□□□ -0.84
SKA1-204ENST00000488454 PIK3CBP42338 1070 aa9.81□□□□□ -0.84
SKA1-204ENST00000488454 SLC1A6P48664 564 aa9.81□□□□□ -0.84
SKA1-204ENST00000488454 ATP1A2P50993 1020 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms