RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 FARSBQ9NSD9 589 aaKnown RBP9.72□□□□□ -0.85
USP39-215ENST00000481409 AIG1Q9NVV5 245 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 MCM8Q9UJA3 840 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 PLCL2Q9UPR0 1127 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 FEZF1A0PJY2 475 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 CPED1A4D0V7 1026 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 LRIT2A6NDA9 550 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 TMX2-CTNND1H3BSU7 103 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 NTN3O00634 580 aaPredicted RBP9.71□□□□□ -0.86
USP39-215ENST00000481409 LCMT2O60294 686 aaKnown RBP9.71□□□□□ -0.86
USP39-215ENST00000481409 GUCY1B2O75343 617 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 CD59P13987 128 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 JAK1P23458 1154 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 MLLT3P42568 568 aaPredicted RBP9.71□□□□□ -0.86
USP39-215ENST00000481409 PPM1FP49593 454 aaPredicted RBP9.71□□□□□ -0.86
USP39-215ENST00000481409 ARL4DP49703 201 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 RASSF2P50749 326 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 NEK2P51955 445 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 RAP1GDS1P52306 607 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 CLNS1AP54105 237 aaKnown RBP9.71□□□□□ -0.86
USP39-215ENST00000481409 HMGCS1Q01581 520 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 MEF2AQ02078 507 aaPredicted RBP9.71□□□□□ -0.86
USP39-215ENST00000481409 SPEM2Q0P670 501 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 TBL3Q12788 808 aaKnown RBP9.71□□□□□ -0.86
USP39-215ENST00000481409 DDX39BQ13838 428 aaKnown RBP9.71□□□□□ -0.86
USP39-215ENST00000481409 NDUFA9Q16795 377 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 DPY19L1Q2PZI1 675 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 GALNTL6Q49A17 601 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 AASDHQ4L235 1098 aaPredicted RBP9.71□□□□□ -0.86
USP39-215ENST00000481409 RFTN2Q52LD8 501 aaPredicted RBP9.71□□□□□ -0.86
USP39-215ENST00000481409 SGO1Q5FBB7 561 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 GARNL3Q5VVW2 1013 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 TCEAL6Q6IPX3 200 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 GUSBP11Q6P575 273 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 TRIM40Q6P9F5 258 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 IKBIPQ70UQ0 350 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 ABHD13Q7L211 337 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 VN1R5Q7Z5H4 357 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 ALYREFQ86V81 257 aaKnown RBP9.71□□□□□ -0.86
USP39-215ENST00000481409 ZNF761Q86XN6 746 aaPredicted RBP9.71□□□□□ -0.86
USP39-215ENST00000481409 NAXDQ8IW45 347 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 MIER2Q8N344 545 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 D2HGDHQ8N465 521 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 DNAJC22Q8N4W6 341 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 NATD1Q8N6N6 113 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 ZNF740Q8NDX6 193 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 OR2L5Q8NG80 312 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 OR8K5Q8NH50 307 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 RP9Q8TA86 221 aaKnown RBP9.71□□□□□ -0.86
USP39-215ENST00000481409 TCEAL3Q969E4 200 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 ERP27Q96DN0 273 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 PPP1R36Q96LQ0 422 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 ZNF285Q96NJ3 590 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 TGM7Q96PF1 710 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 NRTNQ99748 197 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 MAP3K3Q99759 626 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 TBCDQ9BTW9 1192 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 CCDC106Q9BWC9 280 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 SLC6A16Q9GZN6 736 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 NMUR2Q9GZQ4 415 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 REXO4Q9GZR2 422 aaKnown RBP9.71□□□□□ -0.86
USP39-215ENST00000481409 SMOC1Q9H4F8 434 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 DDX31Q9H8H2 851 aaKnown RBP9.71□□□□□ -0.86
USP39-215ENST00000481409 PRM3Q9NNZ6 103 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 HCN4Q9Y3Q4 1203 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 PCDHGA1Q9Y5H4 931 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 GPR45Q9Y5Y3 372 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 SLC22A7Q9Y694 548 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 CAPN7Q9Y6W3 813 aa9.71□□□□□ -0.86
USP39-215ENST00000481409 ARHGAP10A1A4S6 786 aa9.7□□□□□ -0.86
USP39-215ENST00000481409 SLC9B1P1A6NJY1 282 aa9.7□□□□□ -0.86
USP39-215ENST00000481409 BBIP1A8MTZ0 92 aa9.7□□□□□ -0.86
USP39-215ENST00000481409 CAPN14A8MX76 684 aa9.7□□□□□ -0.86
USP39-215ENST00000481409 PSMD12O00232 456 aaPredicted RBP9.7□□□□□ -0.86
USP39-215ENST00000481409 NDUFS4O43181 175 aa9.7□□□□□ -0.86
USP39-215ENST00000481409 CTSVO60911 334 aa9.7□□□□□ -0.86
USP39-215ENST00000481409 RASSF9O75901 435 aa9.7□□□□□ -0.86
USP39-215ENST00000481409 SCELO95171 688 aa9.7□□□□□ -0.86
USP39-215ENST00000481409 TGFB1P01137 390 aa9.7□□□□□ -0.86
USP39-215ENST00000481409 RPLP0P05388 317 aaKnown RBP9.7□□□□□ -0.86
USP39-215ENST00000481409 THRAP10827 490 aa9.7□□□□□ -0.86
USP39-215ENST00000481409 ST6GAL1P15907 406 aa9.7□□□□□ -0.86
USP39-215ENST00000481409 NELFEP18615 380 aaKnown RBP9.7□□□□□ -0.86
USP39-215ENST00000481409 PRPS1L1P21108 318 aa9.7□□□□□ -0.86
USP39-215ENST00000481409 TIA1P31483 386 aaKnown RBP eCLIP9.7□□□□□ -0.86
USP39-215ENST00000481409 LSSP48449 732 aa9.7□□□□□ -0.86
USP39-215ENST00000481409 CLDN8P56748 225 aa9.7□□□□□ -0.86
USP39-215ENST00000481409 RPL38P63173 70 aaKnown RBP9.7□□□□□ -0.86
USP39-215ENST00000481409 YBX1P67809 324 aaKnown RBP9.7□□□□□ -0.86
USP39-215ENST00000481409 ACY1Q03154 408 aa9.7□□□□□ -0.86
USP39-215ENST00000481409 ZNF763Q0D2J5 394 aa9.7□□□□□ -0.86
USP39-215ENST00000481409 LRRC74AQ0VAA2 488 aa9.7□□□□□ -0.86
USP39-215ENST00000481409 STX5Q13190 355 aa9.7□□□□□ -0.86
USP39-215ENST00000481409 SF3A2Q15428 464 aaKnown RBP9.7□□□□□ -0.86
USP39-215ENST00000481409 CCDC6Q16204 474 aa9.7□□□□□ -0.86
USP39-215ENST00000481409 ZSCAN26Q16670 478 aa9.7□□□□□ -0.86
USP39-215ENST00000481409 COQ5Q5HYK3 327 aa9.7□□□□□ -0.86
USP39-215ENST00000481409 PERM1Q5SV97 790 aa9.7□□□□□ -0.86
USP39-215ENST00000481409 IL23RQ5VWK5 629 aa9.7□□□□□ -0.86
USP39-215ENST00000481409 OR4C11Q6IEV9 310 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms