RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 OR51B5Q9H339 312 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 DUX4Q9UBX2 424 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 ASF1AQ9Y294 204 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 MEIOCA2RUB1 952 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 H3BSH0 61 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 FXYD1O00168 92 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 PAPSS2O95340 614 aaPredicted RBP13.08□□□□□ -0.32
USP42-206ENST00000479544 GABARAPL2P60520 117 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 CDK6Q00534 326 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 MEF2AQ02078 507 aaPredicted RBP13.08□□□□□ -0.32
USP42-206ENST00000479544 PPIGQ13427 754 aaKnown RBP eCLIP13.08□□□□□ -0.32
USP42-206ENST00000479544 FGFBP1Q14512 234 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 MAD2L1BPQ15013 274 aaPredicted RBP13.08□□□□□ -0.32
USP42-206ENST00000479544 KCNA10Q16322 511 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 CST9Q5W186 159 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 ZSWIM9Q86XI8 627 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 Q8N402 240 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 LSM14AQ8ND56 463 aaKnown RBP13.08□□□□□ -0.32
USP42-206ENST00000479544 TEFMQ96QE5 360 aaKnown RBP13.08□□□□□ -0.32
USP42-206ENST00000479544 CCM2Q9BSQ5 444 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 TREX1Q9NSU2 369 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 HECAQ9UBI9 543 aaPredicted RBP13.08□□□□□ -0.32
USP42-206ENST00000479544 CORO2BQ9UQ03 480 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 NOX1Q9Y5S8 564 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 ECM29Q5VYK3 1845 aa13.07□□□□□ -0.32
USP42-206ENST00000479544 MID1O15344 667 aa13.07□□□□□ -0.32
USP42-206ENST00000479544 PCDH7O60245 1069 aa13.07□□□□□ -0.32
USP42-206ENST00000479544 HNRNPFP52597 415 aaKnown RBP13.07□□□□□ -0.32
USP42-206ENST00000479544 CEP68Q76N32 757 aa13.07□□□□□ -0.32
USP42-206ENST00000479544 MEX3DQ86XN8 651 aaKnown RBP13.07□□□□□ -0.32
USP42-206ENST00000479544 ELMOD1Q8N336 334 aa13.07□□□□□ -0.32
USP42-206ENST00000479544 GPR151Q8TDV0 419 aa13.07□□□□□ -0.32
USP42-206ENST00000479544 SLC9A6Q92581 669 aa13.07□□□□□ -0.32
USP42-206ENST00000479544 ATOH8Q96SQ7 321 aa13.07□□□□□ -0.32
USP42-206ENST00000479544 HDHD5Q9BXW7 423 aa13.07□□□□□ -0.32
USP42-206ENST00000479544 NFKBIZQ9BYH8 718 aa13.07□□□□□ -0.32
USP42-206ENST00000479544 MAGEH1Q9H213 219 aa13.07□□□□□ -0.32
USP42-206ENST00000479544 FAM83DQ9H4H8 585 aa13.07□□□□□ -0.32
USP42-206ENST00000479544 RNF186Q9NXI6 227 aa13.07□□□□□ -0.32
USP42-206ENST00000479544 TLR6Q9Y2C9 796 aa13.07□□□□□ -0.32
USP42-206ENST00000479544 POFUT2Q9Y2G5 429 aa13.07□□□□□ -0.32
USP42-206ENST00000479544 RWDD3Q9Y3V2 267 aa13.07□□□□□ -0.32
USP42-206ENST00000479544 N6AMT1Q9Y5N5 214 aa13.07□□□□□ -0.32
USP42-206ENST00000479544 A0A1W2PPK0 400 aa13.07□□□□□ -0.32
USP42-206ENST00000479544 PLD2O14939 933 aa13.07□□□□□ -0.32
USP42-206ENST00000479544 NPPAP01160 153 aa13.07□□□□□ -0.32
USP42-206ENST00000479544 ADARB1P78563 741 aaKnown RBP13.07□□□□□ -0.32
USP42-206ENST00000479544 MTAPQ13126 283 aa13.07□□□□□ -0.32
USP42-206ENST00000479544 SPHARQ15513 63 aa13.07□□□□□ -0.32
USP42-206ENST00000479544 ATAT1Q5SQI0 421 aa13.07□□□□□ -0.32
USP42-206ENST00000479544 VARS2Q5ST30 1063 aaKnown RBP13.07□□□□□ -0.32
USP42-206ENST00000479544 OR5H6Q8NGV6 325 aa13.07□□□□□ -0.32
USP42-206ENST00000479544 DPCDQ9BVM2 203 aaPredicted RBP13.07□□□□□ -0.32
USP42-206ENST00000479544 SMOC2Q9H3U7 446 aa13.07□□□□□ -0.32
USP42-206ENST00000479544 SLC32A1Q9H598 525 aa13.07□□□□□ -0.32
USP42-206ENST00000479544 OSER1Q9NX31 292 aa13.07□□□□□ -0.32
USP42-206ENST00000479544 PPIEQ9UNP9 301 aaKnown RBP13.07□□□□□ -0.32
USP42-206ENST00000479544 RUVBL1Q9Y265 456 aaKnown RBP13.07□□□□□ -0.32
USP42-206ENST00000479544 CMAHPQ9Y471 501 aa13.07□□□□□ -0.32
USP42-206ENST00000479544 SPAG17Q6Q759 2223 aa13.07□□□□□ -0.32
USP42-206ENST00000479544 A0A1W2PQL4 384 aaPredicted RBP13.07□□□□□ -0.32
USP42-206ENST00000479544 SCAMP1O15126 338 aa13.07□□□□□ -0.32
USP42-206ENST00000479544 KHDRBS3O75525 346 aaKnown RBP13.07□□□□□ -0.32
USP42-206ENST00000479544 SULT1C4O75897 302 aa13.07□□□□□ -0.32
USP42-206ENST00000479544 B3GALT4O96024 378 aa13.07□□□□□ -0.32
USP42-206ENST00000479544 ETFAP13804 333 aa13.07□□□□□ -0.32
USP42-206ENST00000479544 TNFSF8P32971 234 aa13.07□□□□□ -0.32
USP42-206ENST00000479544 SPAM1P38567 509 aa13.07□□□□□ -0.32
USP42-206ENST00000479544 CLCN4P51793 760 aa13.07□□□□□ -0.32
USP42-206ENST00000479544 GP2P55259 537 aaKnown RBP13.07□□□□□ -0.32
USP42-206ENST00000479544 SELENBP1Q13228 472 aa13.07□□□□□ -0.32
USP42-206ENST00000479544 HEPACAMQ14CZ8 416 aa13.07□□□□□ -0.32
USP42-206ENST00000479544 ATAD3CQ5T2N8 411 aa13.07□□□□□ -0.32
USP42-206ENST00000479544 NOXRED1Q6NXP6 359 aa13.07□□□□□ -0.32
USP42-206ENST00000479544 PNCKQ6P2M8 343 aa13.07□□□□□ -0.32
USP42-206ENST00000479544 OR10T2Q8NGX3 314 aa13.07□□□□□ -0.32
USP42-206ENST00000479544 UBXN10Q96LJ8 280 aa13.07□□□□□ -0.32
USP42-206ENST00000479544 RACGAP1Q9H0H5 632 aa13.07□□□□□ -0.32
USP42-206ENST00000479544 ZBTB42B2RXF5 422 aa13.06□□□□□ -0.32
USP42-206ENST00000479544 PDPK1O15530 556 aa13.06□□□□□ -0.32
USP42-206ENST00000479544 C6orf47O95873 294 aa13.06□□□□□ -0.32
USP42-206ENST00000479544 BCHEP06276 602 aa13.06□□□□□ -0.32
USP42-206ENST00000479544 EDNRBP24530 442 aa13.06□□□□□ -0.32
USP42-206ENST00000479544 EPHA2P29317 976 aa13.06□□□□□ -0.32
USP42-206ENST00000479544 LIPAP38571 399 aa13.06□□□□□ -0.32
USP42-206ENST00000479544 FCGRTP55899 365 aa13.06□□□□□ -0.32
USP42-206ENST00000479544 CAV3P56539 151 aa13.06□□□□□ -0.32
USP42-206ENST00000479544 GALNT1Q10472 559 aaPredicted RBP13.06□□□□□ -0.32
USP42-206ENST00000479544 TEAD4Q15561 434 aa13.06□□□□□ -0.32
USP42-206ENST00000479544 IER5LQ5T953 404 aa13.06□□□□□ -0.32
USP42-206ENST00000479544 ARL9Q6T311 187 aa13.06□□□□□ -0.32
USP42-206ENST00000479544 LRRTM3Q86VH5 581 aa13.06□□□□□ -0.32
USP42-206ENST00000479544 TRPV1Q8NER1 839 aa13.06□□□□□ -0.32
USP42-206ENST00000479544 C16orf70Q9BSU1 422 aa13.06□□□□□ -0.32
USP42-206ENST00000479544 GULP1Q9UBP9 304 aa13.06□□□□□ -0.32
USP42-206ENST00000479544 SLC25A13Q9UJS0 675 aa13.06□□□□□ -0.32
USP42-206ENST00000479544 BAIAP2Q9UQB8 552 aa13.06□□□□□ -0.32
USP42-206ENST00000479544 RPL36Q9Y3U8 105 aaKnown RBP13.06□□□□□ -0.32
USP42-206ENST00000479544 ALPPL2P10696 532 aa13.06□□□□□ -0.32
USP42-206ENST00000479544 CNR2P34972 360 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms