RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 CTBP1Q13363 440 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 ATP1A4Q13733 1029 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 GRM7Q14831 915 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 ARHGAP19Q14CB8 494 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 CYP2A13Q16696 494 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 KLHL38Q2WGJ6 581 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 CCSMST1Q4G0I0 132 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 NKAIN1Q4KMZ8 207 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 ACSBG2Q5FVE4 666 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 RNASEH2BQ5TBB1 312 aaKnown RBP6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 YOD1Q5VVQ6 348 aaPredicted RBP6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 FCRL6Q6DN72 434 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 NEK10Q6ZWH5 1172 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 PCGF5Q86SE9 256 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 MRGPREQ86SM8 312 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 TTC29Q8NA56 475 aaPredicted RBP6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 OR2L3Q8NG85 312 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 OR9A1PQ8NGU1 263 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 OR2Y1Q8NGV0 311 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 ANP32BQ92688 251 aaKnown RBP6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 KCNJ9Q92806 393 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 SLCO2A1Q92959 643 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 FKBP10Q96AY3 582 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 FER1L6-AS2Q96M78 137 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 C8orf49Q96NF6 230 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 SELENOSQ9BQE4 189 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 FAM167BQ9BTA0 163 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 RSRP1Q9BUV0 290 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 MLXIPLQ9NP71 852 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 FBXO6Q9NRD1 293 aaPredicted RBP6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 CUTCQ9NTM9 273 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 C20orf96Q9NUD7 363 aaPredicted RBP6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 GFOD1Q9NXC2 390 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 TRMT1Q9NXH9 659 aaKnown RBP6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 KLHL42Q9P2K6 505 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 ANKMY1Q9P2S6 941 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 VTI1BQ9UEU0 232 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 ASIC3Q9UHC3 531 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 PTRH2Q9Y3E5 179 aaKnown RBP6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 ZNF451Q9Y4E5 1061 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 PCDHGB7Q9Y5F8 929 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 KLK4Q9Y5K2 254 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 COMMD10Q9Y6G5 202 aa6.5□□□□□ -1.37
CCDC88A-213ENST00000476903 PCSK5Q92824 1860 aa6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 ASH1LQ9NR48 2969 aaKnown RBP6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 A0A1W2PPV9 198 aa6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 KRT87PA6NCN2 255 aa6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 PEX12O00623 359 aa6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 DSCR3O14972 297 aa6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 SRPX2O60687 465 aaPredicted RBP6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 DPM1O60762 260 aa6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 CTSVO60911 334 aa6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 CCNDBP1O95273 360 aa6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 TTC4O95801 387 aa6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 MPC1LP0DKB6 136 aa6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 ERVK-10P10266 1014 aa6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 ERGP11308 486 aa6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 ENO3P13929 434 aaPredicted RBP6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 PGAM1P18669 254 aa6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 RPA3P35244 121 aaPredicted RBP6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 VSX2P58304 361 aaPredicted RBP6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 CUL1Q13616 776 aa6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 PTK6Q13882 451 aa6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 FASTKQ14296 549 aaKnown RBP6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 SLC9A5Q14940 896 aa6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 FAM214AQ32MH5 1076 aa6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 EEF1AKMT2Q5JPI9 291 aaKnown RBP6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 PAPD7Q5XG87 772 aaKnown RBP6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 UGT3A1Q6NUS8 523 aa6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 ZNF549Q6P9A3 640 aa6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 KCNMB4Q86W47 210 aa6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 HPS6Q86YV9 775 aa6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 DENND6AQ8IWF6 608 aa6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 CLEC1AQ8NC01 280 aa6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 FDCSPQ8NFU4 85 aa6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 OR2A1Q8NGT9 310 aa6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 SMPDL3AQ92484 453 aa6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 NACC2Q96BF6 587 aa6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 PTERQ96BW5 349 aa6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 ZNF285Q96NJ3 590 aa6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 RUNDC3BQ96NL0 473 aa6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 NAT9Q9BTE0 207 aa6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 WDR54Q9H977 334 aa6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 MRPS30Q9NP92 439 aaKnown RBP6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 IARS2Q9NSE4 1012 aaKnown RBP6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 UTP6Q9NYH9 597 aaKnown RBP6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 GPR83Q9NYM4 423 aa6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 GALPQ9UBC7 116 aa6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 PCYOX1Q9UHG3 505 aa6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 NXT1Q9UKK6 140 aaKnown RBP6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 FBXO5Q9UKT4 447 aa6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 DHRS7Q9Y394 339 aa6.49□□□□□ -1.37
CCDC88A-213ENST00000476903 SHANK1Q9Y566 2161 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 UBR5O95071 2799 aaPredicted RBP6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 COL12A1Q99715 3063 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 A0A0J9YVX5 310 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 HYKKA2RU49 373 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 OR2A25A4D2G3 310 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 A6NL46 340 aa6.48□□□□□ -1.37
CCDC88A-213ENST00000476903 EIF3FO00303 357 aaPredicted RBP6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms