RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 A0A1B0GTH9 108 aa11.82□□□□□ -0.52
SKA3-206ENST00000475251 FAM90A27PA6NNH2 459 aa11.82□□□□□ -0.52
SKA3-206ENST00000475251 CDC40O60508 579 aaKnown RBP eCLIP11.82□□□□□ -0.52
SKA3-206ENST00000475251 RDH16O75452 317 aa11.82□□□□□ -0.52
SKA3-206ENST00000475251 CDC123O75794 336 aaPredicted RBP11.82□□□□□ -0.52
SKA3-206ENST00000475251 HOXD4P09016 255 aaPredicted RBP11.82□□□□□ -0.52
SKA3-206ENST00000475251 ENO3P13929 434 aaPredicted RBP11.82□□□□□ -0.52
SKA3-206ENST00000475251 PAMP19021 973 aa11.82□□□□□ -0.52
SKA3-206ENST00000475251 PTMSP20962 102 aa11.82□□□□□ -0.52
SKA3-206ENST00000475251 NMBRP28336 390 aa11.82□□□□□ -0.52
SKA3-206ENST00000475251 DNAJA1P31689 397 aaKnown RBP11.82□□□□□ -0.52
SKA3-206ENST00000475251 TRHRP34981 398 aaPredicted RBP11.82□□□□□ -0.52
SKA3-206ENST00000475251 PTGER1P34995 402 aa11.82□□□□□ -0.52
SKA3-206ENST00000475251 HLCSP50747 726 aa11.82□□□□□ -0.52
SKA3-206ENST00000475251 RHAGQ02094 409 aa11.82□□□□□ -0.52
SKA3-206ENST00000475251 MYBPHQ13203 477 aa11.82□□□□□ -0.52
SKA3-206ENST00000475251 RNFT1Q5M7Z0 435 aa11.82□□□□□ -0.52
SKA3-206ENST00000475251 SEL1L2Q5TEA6 688 aa11.82□□□□□ -0.52
SKA3-206ENST00000475251 ARMC3Q5W041 872 aa11.82□□□□□ -0.52
SKA3-206ENST00000475251 C4orf22Q6V702 233 aa11.82□□□□□ -0.52
SKA3-206ENST00000475251 ACAD11Q709F0 780 aa11.82□□□□□ -0.52
SKA3-206ENST00000475251 PRSS41Q7RTY9 318 aa11.82□□□□□ -0.52
SKA3-206ENST00000475251 FGD2Q7Z6J4 655 aa11.82□□□□□ -0.52
SKA3-206ENST00000475251 ASPGQ86U10 573 aa11.82□□□□□ -0.52
SKA3-206ENST00000475251 MYRIPQ8NFW9 859 aa11.82□□□□□ -0.52
SKA3-206ENST00000475251 ZCCHC10Q8TBK6 192 aa11.82□□□□□ -0.52
SKA3-206ENST00000475251 PEX11GQ96HA9 241 aa11.82□□□□□ -0.52
SKA3-206ENST00000475251 CCDC68Q9H2F9 335 aa11.82□□□□□ -0.52
SKA3-206ENST00000475251 NPDC1Q9NQX5 325 aaPredicted RBP11.82□□□□□ -0.52
SKA3-206ENST00000475251 RNF6Q9Y252 685 aa11.82□□□□□ -0.52
SKA3-206ENST00000475251 MTORP42345 2549 aa11.82□□□□□ -0.52
SKA3-206ENST00000475251 TCRBV7S2A1N4TA0A589 114 aa11.81□□□□□ -0.52
SKA3-206ENST00000475251 OR2W5A6NFC9 320 aa11.81□□□□□ -0.52
SKA3-206ENST00000475251 STATHP02808 62 aa11.81□□□□□ -0.52
SKA3-206ENST00000475251 FHP07954 510 aa11.81□□□□□ -0.52
SKA3-206ENST00000475251 MPC1LP0DKB6 136 aa11.81□□□□□ -0.52
SKA3-206ENST00000475251 TFEBP19484 476 aa11.81□□□□□ -0.52
SKA3-206ENST00000475251 SKIV2L2P42285 1042 aaKnown RBP11.81□□□□□ -0.52
SKA3-206ENST00000475251 MEOX1P50221 254 aa11.81□□□□□ -0.52
SKA3-206ENST00000475251 ST13P50502 369 aaKnown RBP11.81□□□□□ -0.52
SKA3-206ENST00000475251 ITGA8P53708 1063 aa11.81□□□□□ -0.52
SKA3-206ENST00000475251 IST1P53990 364 aa11.81□□□□□ -0.52
SKA3-206ENST00000475251 CRADDP78560 199 aa11.81□□□□□ -0.52
SKA3-206ENST00000475251 TFF3Q07654 80 aa11.81□□□□□ -0.52
SKA3-206ENST00000475251 KCNJ11Q14654 390 aa11.81□□□□□ -0.52
SKA3-206ENST00000475251 RPS6KA1Q15418 735 aa11.81□□□□□ -0.52
SKA3-206ENST00000475251 KIAA1328Q86T90 577 aa11.81□□□□□ -0.52
SKA3-206ENST00000475251 TGIF2LYQ8IUE0 185 aa11.81□□□□□ -0.52
SKA3-206ENST00000475251 C16orf52Q8NHV5 167 aa11.81□□□□□ -0.52
SKA3-206ENST00000475251 SLC13A3Q8WWT9 602 aa11.81□□□□□ -0.52
SKA3-206ENST00000475251 ASB11Q8WXH4 323 aa11.81□□□□□ -0.52
SKA3-206ENST00000475251 TBC1D20Q96BZ9 403 aa11.81□□□□□ -0.52
SKA3-206ENST00000475251 TM4SF19Q96DZ7 209 aa11.81□□□□□ -0.52
SKA3-206ENST00000475251 MFSD3Q96ES6 412 aa11.81□□□□□ -0.52
SKA3-206ENST00000475251 KIFC1Q9BW19 673 aa11.81□□□□□ -0.52
SKA3-206ENST00000475251 RBCK1Q9BYM8 510 aa11.81□□□□□ -0.52
SKA3-206ENST00000475251 TSGA10Q9BZW7 698 aa11.81□□□□□ -0.52
SKA3-206ENST00000475251 CXXC4Q9H2H0 198 aa11.81□□□□□ -0.52
SKA3-206ENST00000475251 INTS10Q9NVR2 710 aaKnown RBP11.81□□□□□ -0.52
SKA3-206ENST00000475251 PACSIN2Q9UNF0 486 aaPredicted RBP11.81□□□□□ -0.52
SKA3-206ENST00000475251 NAALAD2Q9Y3Q0 740 aa11.81□□□□□ -0.52
SKA3-206ENST00000475251 NKX2-6A6NCS4 301 aa11.8□□□□□ -0.52
SKA3-206ENST00000475251 GFYI3L273 518 aa11.8□□□□□ -0.52
SKA3-206ENST00000475251 ZNHIT1O43257 154 aa11.8□□□□□ -0.52
SKA3-206ENST00000475251 HS6ST1O60243 411 aa11.8□□□□□ -0.52
SKA3-206ENST00000475251 TOXO94900 526 aa11.8□□□□□ -0.52
SKA3-206ENST00000475251 DRD2P14416 443 aa11.8□□□□□ -0.52
SKA3-206ENST00000475251 HOXB4P17483 251 aaPredicted RBP11.8□□□□□ -0.52
SKA3-206ENST00000475251 CCND1P24385 295 aa11.8□□□□□ -0.52
SKA3-206ENST00000475251 ARNTP27540 789 aa11.8□□□□□ -0.52
SKA3-206ENST00000475251 IMPA1P29218 277 aa11.8□□□□□ -0.52
SKA3-206ENST00000475251 CLCN7P51798 805 aa11.8□□□□□ -0.52
SKA3-206ENST00000475251 MLF1P58340 268 aa11.8□□□□□ -0.52
SKA3-206ENST00000475251 TBPL1P62380 186 aa11.8□□□□□ -0.52
SKA3-206ENST00000475251 BASP1P80723 227 aaKnown RBP11.8□□□□□ -0.52
SKA3-206ENST00000475251 ZNF468Q5VIY5 522 aaPredicted RBP11.8□□□□□ -0.52
SKA3-206ENST00000475251 KIAA0930Q6ICG6 404 aaPredicted RBP11.8□□□□□ -0.52
SKA3-206ENST00000475251 CAPN13Q6MZZ7 669 aaPredicted RBP11.8□□□□□ -0.52
SKA3-206ENST00000475251 LRRC8EQ6NSJ5 796 aa11.8□□□□□ -0.52
SKA3-206ENST00000475251 C17orf64Q86WR6 236 aa11.8□□□□□ -0.52
SKA3-206ENST00000475251 PDSS2Q86YH6 399 aa11.8□□□□□ -0.52
SKA3-206ENST00000475251 CILP2Q8IUL8 1156 aa11.8□□□□□ -0.52
SKA3-206ENST00000475251 LRRC56Q8IYG6 542 aaPredicted RBP11.8□□□□□ -0.52
SKA3-206ENST00000475251 MARVELD2Q8N4S9 558 aa11.8□□□□□ -0.52
SKA3-206ENST00000475251 TBC1D19Q8N5T2 526 aa11.8□□□□□ -0.52
SKA3-206ENST00000475251 PRELID2Q8N945 189 aa11.8□□□□□ -0.52
SKA3-206ENST00000475251 ZFP62Q8NB50 900 aaPredicted RBP11.8□□□□□ -0.52
SKA3-206ENST00000475251 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.8□□□□□ -0.52
SKA3-206ENST00000475251 KCT2Q8NC54 265 aa11.8□□□□□ -0.52
SKA3-206ENST00000475251 KCNJ9Q92806 393 aa11.8□□□□□ -0.52
SKA3-206ENST00000475251 TSLPQ969D9 159 aa11.8□□□□□ -0.52
SKA3-206ENST00000475251 LACRTQ9GZZ8 138 aa11.8□□□□□ -0.52
SKA3-206ENST00000475251 LANCL2Q9NS86 450 aa11.8□□□□□ -0.52
SKA3-206ENST00000475251 HCFC1P51610 2035 aa11.8□□□□□ -0.52
SKA3-206ENST00000475251 SAGE2PA6NJ88 616 aa11.79□□□□□ -0.52
SKA3-206ENST00000475251 GOLGA8KD6RF30 607 aa11.79□□□□□ -0.52
SKA3-206ENST00000475251 GOLGA8TH3BQL2 631 aa11.79□□□□□ -0.52
SKA3-206ENST00000475251 ACOT7O00154 380 aa11.79□□□□□ -0.52
SKA3-206ENST00000475251 EIF3FO00303 357 aaPredicted RBP11.79□□□□□ -0.52
SKA3-206ENST00000475251 PEX1O43933 1283 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms