RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 SKP1P63208 163 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 EFNB1P98172 346 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 GALK2Q01415 458 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 CACNG1Q06432 222 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 NCBP1Q09161 790 aaKnown RBP4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 DNASE1L3Q13609 305 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 GPR176Q14439 515 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 MVPQ14764 893 aaKnown RBP4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 MAPK6Q16659 721 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 HSDL1Q3SXM5 330 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 PDLIM3Q53GG5 364 aaPredicted RBP4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 ZNF667Q5HYK9 610 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 TMEM31Q5JXX7 168 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 WLSQ5T9L3 541 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 NCR3LG1Q68D85 454 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 TMEM81Q6P7N7 255 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 CFAP77Q6ZQR2 320 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 FRA10AC1Q70Z53 315 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 VTCN1Q7Z7D3 282 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 MISPQ8IVT2 679 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 FOXRED2Q8IWF2 684 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 UBE2J2Q8N2K1 259 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 RNF148Q8N7C7 305 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 STKLD1Q8NE28 680 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 OR8J2Q8NGG1 315 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 SUN3Q8TAQ9 357 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 FAM81AQ8TBF8 368 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 ZNF596Q8TC21 504 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 FIG4Q92562 907 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 LPGAT1Q92604 370 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 MCUR1Q96AQ8 359 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 HAVCR1Q96D42 359 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 MMABQ96EY8 250 aaPredicted RBP4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 MCRS1Q96EZ8 462 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 RRNAD1Q96FB5 475 aaKnown RBP4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 ELMOD3Q96FG2 381 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 FAM227BQ96M60 508 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 OR2A14Q96R47 310 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 CHP1Q99653 195 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 DDX47Q9H0S4 455 aaKnown RBP4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 SLC25A32Q9H2D1 315 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 SLCO5A1Q9H2Y9 848 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 ANKZF1Q9H8Y5 726 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 CNOT10Q9H9A5 744 aaKnown RBP4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 MOV10Q9HCE1 1003 aaKnown RBP4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 RRAGDQ9NQL2 400 aaPredicted RBP4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 MAN2C1Q9NTJ4 1040 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 ABHD10Q9NUJ1 306 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 PDP1Q9P0J1 537 aaPredicted RBP4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 SEMA5BQ9P283 1151 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 HSPB7Q9UBY9 170 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 UBQLN2Q9UHD9 624 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 DCDC2Q9UHG0 476 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 PACSIN2Q9UNF0 486 aaPredicted RBP4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 PLA2G4CQ9UP65 541 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 WBP11Q9Y2W2 641 aaKnown RBP4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 MAU2Q9Y6X3 613 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 A0A1B0GUL7 405 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 A0A1W2PR77 199 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 A0A1W2PRG0 241 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 ANKRD61A6NGH8 418 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 GOLGA8RI6L899 631 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 NR5A2O00482 541 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 GPR171O14626 319 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 CDH16O75309 829 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 PDE5AO76074 875 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 DDNO94850 711 aaPredicted RBP4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 CALCAP01258 141 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 KRT6AP02538 564 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 NGFRP08138 427 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 SRPRAP08240 638 aaKnown RBP4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 SLC2A3P11169 496 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 GNAZP19086 355 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 HOXA9P31269 272 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 PBX1P40424 430 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 CRATP43155 626 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 SLC1A6P48664 564 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 CLCN5P51795 746 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 HNRNPFP52597 415 aaKnown RBP4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 ARSFP54793 590 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 PTENP60484 403 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 PHEXP78562 749 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 S100A12P80511 92 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 PLOD1Q02809 727 aaPredicted RBP4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 BST1Q10588 318 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 MTAPQ13126 283 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 MSLNQ13421 630 aaPredicted RBP4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 CSHL1Q14406 222 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 ALX1Q15699 326 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 SSX2Q16385 188 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 SGCAQ16586 387 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 GSTA3Q16772 222 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 PARP6Q2NL67 630 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 ODF3L2Q3SX64 289 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 IQCCQ4KMZ1 466 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 TEX44Q53QW1 395 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 BEX5Q5H9J7 111 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 LDLRAP1Q5SW96 308 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 MLIPQ5VWP3 458 aa4.6□□□□□ -1.67
CCDC88A-210ENST00000468534 KRT39Q6A163 491 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms