RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 ZUFSPQ96AP4 578 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 RHBDF1Q96CC6 855 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 GPR78Q96P69 363 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 ATOH8Q96SQ7 321 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 C17orf62Q9BQA9 187 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 PCBD2Q9H0N5 130 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 SLC6A20Q9NP91 592 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 MRPS30Q9NP92 439 aaKnown RBP11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 ABCF3Q9NUQ8 709 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 NUDT4Q9NZJ9 180 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 TCFL5Q9UL49 500 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 SNX7Q9UNH6 387 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 KLK4Q9Y5K2 254 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 SEC16AO15027 2179 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 DOCK10Q96BY6 2186 aa11.34□□□□□ -0.59
SQSTM1-206ENST00000466342 NCF1BA6NI72 391 aaPredicted RBP11.34□□□□□ -0.59
SQSTM1-206ENST00000466342 SMIM23A6NLE4 172 aa11.34□□□□□ -0.59
SQSTM1-206ENST00000466342 SYCE1LA8MT33 242 aa11.34□□□□□ -0.59
SQSTM1-206ENST00000466342 NCF1CA8MVU1 366 aaPredicted RBP11.34□□□□□ -0.59
SQSTM1-206ENST00000466342 H3BMH7 237 aa11.34□□□□□ -0.59
SQSTM1-206ENST00000466342 E2F3O00716 465 aa11.34□□□□□ -0.59
SQSTM1-206ENST00000466342 ERLIN1O75477 346 aa11.34□□□□□ -0.59
SQSTM1-206ENST00000466342 OR2B3O76000 313 aa11.34□□□□□ -0.59
SQSTM1-206ENST00000466342 NADKO95544 446 aaPredicted RBP11.34□□□□□ -0.59
SQSTM1-206ENST00000466342 S100BP04271 92 aaPredicted RBP11.34□□□□□ -0.59
SQSTM1-206ENST00000466342 ALPPP05187 535 aa11.34□□□□□ -0.59
SQSTM1-206ENST00000466342 CAPN1P07384 714 aa11.34□□□□□ -0.59
SQSTM1-206ENST00000466342 NCF1P14598 390 aaPredicted RBP11.34□□□□□ -0.59
SQSTM1-206ENST00000466342 YBX1P67809 324 aaKnown RBP11.34□□□□□ -0.59
SQSTM1-206ENST00000466342 ABATP80404 500 aa11.34□□□□□ -0.59
SQSTM1-206ENST00000466342 IFFO1Q0D2I5 559 aa11.34□□□□□ -0.59
SQSTM1-206ENST00000466342 TSNAXIP1Q2TAA8 658 aa11.34□□□□□ -0.59
SQSTM1-206ENST00000466342 PTCHD3Q3KNS1 767 aa11.34□□□□□ -0.59
SQSTM1-206ENST00000466342 TECRLQ5HYJ1 363 aa11.34□□□□□ -0.59
SQSTM1-206ENST00000466342 ZNF385CQ66K41 422 aaPredicted RBP11.34□□□□□ -0.59
SQSTM1-206ENST00000466342 FCRL6Q6DN72 434 aa11.34□□□□□ -0.59
SQSTM1-206ENST00000466342 SULT1C3Q6IMI6 304 aa11.34□□□□□ -0.59
SQSTM1-206ENST00000466342 LCN10Q6JVE6 187 aa11.34□□□□□ -0.59
SQSTM1-206ENST00000466342 RHBDD2Q6NTF9 364 aa11.34□□□□□ -0.59
SQSTM1-206ENST00000466342 TLDC1Q6P9B6 456 aa11.34□□□□□ -0.59
SQSTM1-206ENST00000466342 FIGLAQ6QHK4 219 aa11.34□□□□□ -0.59
SQSTM1-206ENST00000466342 LCTLQ6UWM7 567 aa11.34□□□□□ -0.59
SQSTM1-206ENST00000466342 BNC2Q6ZN30 1099 aaPredicted RBP11.34□□□□□ -0.59
SQSTM1-206ENST00000466342 CDH24Q86UP0 819 aa11.34□□□□□ -0.59
SQSTM1-206ENST00000466342 LCA5Q86VQ0 697 aa11.34□□□□□ -0.59
SQSTM1-206ENST00000466342 PARP9Q8IXQ6 854 aa11.34□□□□□ -0.59
SQSTM1-206ENST00000466342 TCAIMQ8N3R3 496 aa11.34□□□□□ -0.59
SQSTM1-206ENST00000466342 RIBC1Q8N443 379 aaPredicted RBP11.34□□□□□ -0.59
SQSTM1-206ENST00000466342 ENDOVQ8N8Q3 282 aaKnown RBP11.34□□□□□ -0.59
SQSTM1-206ENST00000466342 ACMSDQ8TDX5 336 aa11.34□□□□□ -0.59
SQSTM1-206ENST00000466342 ITLN2Q8WWU7 325 aaPredicted RBP11.34□□□□□ -0.59
SQSTM1-206ENST00000466342 TM9SF4Q92544 642 aa11.34□□□□□ -0.59
SQSTM1-206ENST00000466342 EXT2Q93063 718 aa11.34□□□□□ -0.59
SQSTM1-206ENST00000466342 ALKBH8Q96BT7 664 aaKnown RBP11.34□□□□□ -0.59
SQSTM1-206ENST00000466342 PYCR2Q96C36 320 aa11.34□□□□□ -0.59
SQSTM1-206ENST00000466342 TSNARE1Q96NA8 513 aa11.34□□□□□ -0.59
SQSTM1-206ENST00000466342 PLCL2Q9UPR0 1127 aa11.34□□□□□ -0.59
SQSTM1-206ENST00000466342 KLHL20Q9Y2M5 609 aa11.34□□□□□ -0.59
SQSTM1-206ENST00000466342 IGKV1-8A0A0C4DH67 115 aa11.33□□□□□ -0.6
SQSTM1-206ENST00000466342 OR2A25A4D2G3 310 aa11.33□□□□□ -0.6
SQSTM1-206ENST00000466342 SUPT3HB4E1H0 165 aa11.33□□□□□ -0.6
SQSTM1-206ENST00000466342 C9J4A7 227 aa11.33□□□□□ -0.6
SQSTM1-206ENST00000466342 CTIFO43310 598 aaKnown RBP11.33□□□□□ -0.6
SQSTM1-206ENST00000466342 SUPT3HO75486 399 aa11.33□□□□□ -0.6
SQSTM1-206ENST00000466342 IPO13O94829 963 aaKnown RBP11.33□□□□□ -0.6
SQSTM1-206ENST00000466342 SLC6A12P48065 614 aa11.33□□□□□ -0.6
SQSTM1-206ENST00000466342 KCNC1P48547 511 aa11.33□□□□□ -0.6
SQSTM1-206ENST00000466342 KRTAP10-9P60411 292 aa11.33□□□□□ -0.6
SQSTM1-206ENST00000466342 ATP1A4Q13733 1029 aa11.33□□□□□ -0.6
SQSTM1-206ENST00000466342 MYBPC3Q14896 1274 aa11.33□□□□□ -0.6
SQSTM1-206ENST00000466342 DEFB110Q30KQ9 67 aa11.33□□□□□ -0.6
SQSTM1-206ENST00000466342 ZNF425Q6IV72 752 aa11.33□□□□□ -0.6
SQSTM1-206ENST00000466342 FAM198BQ6UWH4 519 aa11.33□□□□□ -0.6
SQSTM1-206ENST00000466342 C17orf64Q86WR6 236 aa11.33□□□□□ -0.6
SQSTM1-206ENST00000466342 KLHDC8AQ8IYD2 350 aa11.33□□□□□ -0.6
SQSTM1-206ENST00000466342 CYP4X1Q8N118 509 aa11.33□□□□□ -0.6
SQSTM1-206ENST00000466342 PROKR1Q8TCW9 393 aa11.33□□□□□ -0.6
SQSTM1-206ENST00000466342 GRHL3Q8TE85 626 aa11.33□□□□□ -0.6
SQSTM1-206ENST00000466342 FAR1Q8WVX9 515 aa11.33□□□□□ -0.6
SQSTM1-206ENST00000466342 OR4K3Q96R72 315 aa11.33□□□□□ -0.6
SQSTM1-206ENST00000466342 PLCD4Q9BRC7 762 aa11.33□□□□□ -0.6
SQSTM1-206ENST00000466342 TMEM79Q9BSE2 394 aa11.33□□□□□ -0.6
SQSTM1-206ENST00000466342 HAUS8Q9BT25 410 aa11.33□□□□□ -0.6
SQSTM1-206ENST00000466342 DPH7Q9BTV6 452 aa11.33□□□□□ -0.6
SQSTM1-206ENST00000466342 ROPN1BQ9BZX4 212 aaPredicted RBP11.33□□□□□ -0.6
SQSTM1-206ENST00000466342 SPRTNQ9H040 489 aaPredicted RBP11.33□□□□□ -0.6
SQSTM1-206ENST00000466342 ZNF552Q9H707 407 aaPredicted RBP11.33□□□□□ -0.6
SQSTM1-206ENST00000466342 ROPN1Q9HAT0 212 aaPredicted RBP11.33□□□□□ -0.6
SQSTM1-206ENST00000466342 ZNF358Q9NW07 568 aa11.33□□□□□ -0.6
SQSTM1-206ENST00000466342 WWOXQ9NZC7 414 aa11.33□□□□□ -0.6
SQSTM1-206ENST00000466342 CD274Q9NZQ7 290 aa11.33□□□□□ -0.6
SQSTM1-206ENST00000466342 PTBP2Q9UKA9 531 aaKnown RBP11.33□□□□□ -0.6
SQSTM1-206ENST00000466342 PADI2Q9Y2J8 665 aa11.33□□□□□ -0.6
SQSTM1-206ENST00000466342 A0A1W2PPM1 405 aa11.32□□□□□ -0.6
SQSTM1-206ENST00000466342 TLDC2A0PJX2 215 aa11.32□□□□□ -0.6
SQSTM1-206ENST00000466342 GOLGA8RI6L899 631 aa11.32□□□□□ -0.6
SQSTM1-206ENST00000466342 UBXN8O00124 270 aa11.32□□□□□ -0.6
SQSTM1-206ENST00000466342 TAPBPO15533 448 aa11.32□□□□□ -0.6
SQSTM1-206ENST00000466342 ZSCAN9O15535 394 aaPredicted RBP11.32□□□□□ -0.6
SQSTM1-206ENST00000466342 HCRTR1O43613 425 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms