RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 FAM171BQ6P995 826 aa11.29□□□□□ -0.6
CPSF3-202ENST00000460593 SPATA2LQ8IUW3 424 aaPredicted RBP11.29□□□□□ -0.6
CPSF3-202ENST00000460593 GPR65Q8IYL9 337 aa11.29□□□□□ -0.6
CPSF3-202ENST00000460593 ATP6V1C2Q8NEY4 427 aa11.29□□□□□ -0.6
CPSF3-202ENST00000460593 OR8H1Q8NGG4 311 aa11.29□□□□□ -0.6
CPSF3-202ENST00000460593 KCNJ9Q92806 393 aa11.29□□□□□ -0.6
CPSF3-202ENST00000460593 SH3KBP1Q96B97 665 aa11.29□□□□□ -0.6
CPSF3-202ENST00000460593 FAM83DQ9H4H8 585 aa11.29□□□□□ -0.6
CPSF3-202ENST00000460593 RPS6KA6Q9UK32 745 aa11.29□□□□□ -0.6
CPSF3-202ENST00000460593 KLK4Q9Y5K2 254 aa11.29□□□□□ -0.6
CPSF3-202ENST00000460593 ANKRD36A6QL64 1941 aa11.29□□□□□ -0.6
CPSF3-202ENST00000460593 KRT6AP02538 564 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 KRT6BP04259 564 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 ALPIP09923 528 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 HLA-EP13747 358 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 LPOP22079 712 aaPredicted RBP11.28□□□□□ -0.6
CPSF3-202ENST00000460593 KIR3DL1P43629 444 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 GZMKP49863 264 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 BEX3Q00994 111 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 QPRTQ15274 297 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 FBXO43Q4G163 708 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 DGKKQ5KSL6 1271 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 APOBEC3FQ8IUX4 373 aaKnown RBP11.28□□□□□ -0.6
CPSF3-202ENST00000460593 OR9Q1Q8NGQ5 310 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 EID2BQ96D98 161 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 TTLL2Q9BWV7 592 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 CD244Q9BZW8 370 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 PLCXD1Q9NUJ7 323 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 TMEM45AQ9NWC5 275 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 NDUFAF4Q9P032 175 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 CMAHPQ9Y471 501 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 RAI2Q9Y5P3 530 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 LOC102723532A0A0G2JNH3 316 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 WASH4PA8MWX3 477 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 ARHGEF9O43307 516 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 SUV39H1O43463 412 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 PCDH7O60245 1069 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 MRPS14O60783 128 aaKnown RBP11.28□□□□□ -0.6
CPSF3-202ENST00000460593 PRAMEF11O60813 436 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 ENTPD6O75354 484 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 EPN2O95208 641 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 SLC25A14O95258 325 aaPredicted RBP11.28□□□□□ -0.6
CPSF3-202ENST00000460593 IL1RNP18510 177 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 RPS3P23396 243 aaKnown RBP eCLIP11.28□□□□□ -0.67e-7■■■■□ 25.3
CPSF3-202ENST00000460593 CNR2P34972 360 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 TTPAP49638 278 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 MAD2L1Q13257 205 aaPredicted RBP11.28□□□□□ -0.6
CPSF3-202ENST00000460593 PTGES3Q15185 160 aaKnown RBP11.28□□□□□ -0.6
CPSF3-202ENST00000460593 TAF1AQ15573 450 aaPredicted RBP11.28□□□□□ -0.6
CPSF3-202ENST00000460593 C22orf42Q6IC83 251 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 CCDC149Q6ZUS6 474 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 ADAMTSL2Q86TH1 951 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 OR6K2Q8NGY2 324 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 SETD6Q8TBK2 473 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 RAD9AQ99638 391 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 GON7Q9BXV9 100 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 LINC00597Q9H2U6 94 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 MAGEB17A8MXT2 336 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 GCM2O75603 506 aaPredicted RBP11.28□□□□□ -0.6
CPSF3-202ENST00000460593 LAMP1P11279 417 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 EPORP19235 508 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 RORCP51449 518 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 GPR19Q15760 415 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 SLC35F1Q5T1Q4 408 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 ZNF852Q6ZMS4 543 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 PTCHD4Q6ZW05 846 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 RNF130Q86XS8 419 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 RDH10Q8IZV5 341 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 CELF5Q8N6W0 485 aaKnown RBP11.28□□□□□ -0.6
CPSF3-202ENST00000460593 NELL1Q92832 810 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 SLC39A13Q96H72 371 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 CINPQ9BW66 212 aaPredicted RBP11.28□□□□□ -0.6
CPSF3-202ENST00000460593 B3GNT4Q9C0J1 378 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 CDCP1Q9H5V8 836 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 FZD4Q9ULV1 537 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 MAN2B2Q9Y2E5 1009 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 DHRS7Q9Y394 339 aa11.28□□□□□ -0.6
CPSF3-202ENST00000460593 WDR90Q96KV7 1748 aa11.27□□□□□ -0.6
CPSF3-202ENST00000460593 GBF1Q92538 1859 aa11.27□□□□□ -0.6
CPSF3-202ENST00000460593 EPB42P16452 691 aa11.27□□□□□ -0.6
CPSF3-202ENST00000460593 PKLRP30613 574 aa11.27□□□□□ -0.6
CPSF3-202ENST00000460593 RPS5P46782 204 aaKnown RBP11.27□□□□□ -0.6
CPSF3-202ENST00000460593 MAPK12P53778 367 aa11.27□□□□□ -0.6
CPSF3-202ENST00000460593 RUNX1T1Q06455 604 aa11.27□□□□□ -0.6
CPSF3-202ENST00000460593 CSTF3Q12996 717 aaKnown RBP11.27□□□□□ -0.6
CPSF3-202ENST00000460593 LARS2Q15031 903 aaKnown RBP11.27□□□□□ -0.6
CPSF3-202ENST00000460593 P2RY14Q15391 338 aa11.27□□□□□ -0.6
CPSF3-202ENST00000460593 UPP1Q16831 310 aa11.27□□□□□ -0.6
CPSF3-202ENST00000460593 UGT8Q16880 541 aa11.27□□□□□ -0.6
CPSF3-202ENST00000460593 ZXDCQ2QGD7 858 aaPredicted RBP11.27□□□□□ -0.6
CPSF3-202ENST00000460593 ZNF367Q7RTV3 350 aa11.27□□□□□ -0.6
CPSF3-202ENST00000460593 TRIM46Q7Z4K8 759 aa11.27□□□□□ -0.6
CPSF3-202ENST00000460593 NAGSQ8N159 534 aa11.27□□□□□ -0.6
CPSF3-202ENST00000460593 SKA2Q8WVK7 121 aaPredicted RBP11.27□□□□□ -0.6
CPSF3-202ENST00000460593 ZSCAN5AQ9BUG6 496 aa11.27□□□□□ -0.6
CPSF3-202ENST00000460593 KATNBL1Q9H079 304 aa11.27□□□□□ -0.6
CPSF3-202ENST00000460593 CRISPLD1Q9H336 500 aa11.27□□□□□ -0.6
CPSF3-202ENST00000460593 ELOVL6Q9H5J4 265 aa11.27□□□□□ -0.6
CPSF3-202ENST00000460593 C12orf4Q9NQ89 552 aa11.27□□□□□ -0.6
CPSF3-202ENST00000460593 TLR8Q9NR97 1041 aaKnown RBP11.27□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms