RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 CD200R1Q8TD46 325 aa12.51□□□□□ -0.41
HMGB3-204ENST00000448905 EEF1AKMT1Q8WVE0 214 aa12.51□□□□□ -0.41
HMGB3-204ENST00000448905 ATL1Q8WXF7 558 aa12.51□□□□□ -0.41
HMGB3-204ENST00000448905 MAGOHBQ96A72 148 aaKnown RBP12.51□□□□□ -0.41
HMGB3-204ENST00000448905 TBC1D20Q96BZ9 403 aa12.51□□□□□ -0.41
HMGB3-204ENST00000448905 SCMH1Q96GD3 660 aa12.51□□□□□ -0.41
HMGB3-204ENST00000448905 PEX11GQ96HA9 241 aa12.51□□□□□ -0.41
HMGB3-204ENST00000448905 AARSD1Q9BTE6 412 aaKnown RBP12.51□□□□□ -0.41
HMGB3-204ENST00000448905 ATG10Q9H0Y0 220 aa12.51□□□□□ -0.41
HMGB3-204ENST00000448905 CLK4Q9HAZ1 481 aaKnown RBP12.51□□□□□ -0.41
HMGB3-204ENST00000448905 COQ3Q9NZJ6 369 aa12.51□□□□□ -0.41
HMGB3-204ENST00000448905 ITGB1BP2Q9UKP3 347 aa12.51□□□□□ -0.41
HMGB3-204ENST00000448905 ZGRF1Q86YA3 2104 aa12.5□□□□□ -0.41
HMGB3-204ENST00000448905 POLEQ07864 2286 aa12.5□□□□□ -0.41
HMGB3-204ENST00000448905 OR2W5A6NFC9 320 aa12.5□□□□□ -0.41
HMGB3-204ENST00000448905 URADA6NGE7 173 aa12.5□□□□□ -0.41
HMGB3-204ENST00000448905 GOLGA8MH3BSY2 632 aa12.5□□□□□ -0.41
HMGB3-204ENST00000448905 OR1F1O43749 312 aa12.5□□□□□ -0.41
HMGB3-204ENST00000448905 LCMT2O60294 686 aaKnown RBP12.5□□□□□ -0.41
HMGB3-204ENST00000448905 RDH16O75452 317 aa12.5□□□□□ -0.41
HMGB3-204ENST00000448905 CDC123O75794 336 aaPredicted RBP12.5□□□□□ -0.41
HMGB3-204ENST00000448905 SERPIND1P05546 499 aa12.5□□□□□ -0.41
HMGB3-204ENST00000448905 NPPBP16860 134 aa12.5□□□□□ -0.41
HMGB3-204ENST00000448905 CXCR5P32302 372 aa12.5□□□□□ -0.41
HMGB3-204ENST00000448905 CYB561P49447 251 aa12.5□□□□□ -0.41
HMGB3-204ENST00000448905 RHAGQ02094 409 aa12.5□□□□□ -0.41
HMGB3-204ENST00000448905 RGS1Q08116 209 aa12.5□□□□□ -0.41
HMGB3-204ENST00000448905 SP140Q13342 867 aa12.5□□□□□ -0.41
HMGB3-204ENST00000448905 CSHL1Q14406 222 aa12.5□□□□□ -0.41
HMGB3-204ENST00000448905 USP10Q14694 798 aaKnown RBP12.5□□□□□ -0.41
HMGB3-204ENST00000448905 HSP90AA5PQ58FG0 334 aa12.5□□□□□ -0.41
HMGB3-204ENST00000448905 LCTLQ6UWM7 567 aa12.5□□□□□ -0.41
HMGB3-204ENST00000448905 ZNF662Q6ZS27 426 aa12.5□□□□□ -0.41
HMGB3-204ENST00000448905 ABHD13Q7L211 337 aa12.5□□□□□ -0.41
HMGB3-204ENST00000448905 CEP97Q8IW35 865 aa12.5□□□□□ -0.41
HMGB3-204ENST00000448905 CYP4X1Q8N118 509 aa12.5□□□□□ -0.41
HMGB3-204ENST00000448905 GPATCH11Q8N954 259 aa12.5□□□□□ -0.41
HMGB3-204ENST00000448905 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.5□□□□□ -0.41
HMGB3-204ENST00000448905 GIMAP7Q8NHV1 300 aa12.5□□□□□ -0.41
HMGB3-204ENST00000448905 CA5BP1Q8WTZ4 195 aa12.5□□□□□ -0.41
HMGB3-204ENST00000448905 CHTF18Q8WVB6 975 aa12.5□□□□□ -0.41
HMGB3-204ENST00000448905 SNF8Q96H20 258 aa12.5□□□□□ -0.41
HMGB3-204ENST00000448905 NAP1L3Q99457 506 aaPredicted RBP12.5□□□□□ -0.41
HMGB3-204ENST00000448905 OLFM1Q99784 485 aa12.5□□□□□ -0.41
HMGB3-204ENST00000448905 SPOCK3Q9BQ16 436 aa12.5□□□□□ -0.41
HMGB3-204ENST00000448905 PDE10AQ9Y233 779 aa12.5□□□□□ -0.41
HMGB3-204ENST00000448905 MED16Q9Y2X0 877 aa12.5□□□□□ -0.41
HMGB3-204ENST00000448905 DIDO1Q9BTC0 2240 aaKnown RBP12.5□□□□□ -0.41
HMGB3-204ENST00000448905 NUP210LQ5VU65 1888 aa12.49□□□□□ -0.41
HMGB3-204ENST00000448905 E9PLN8 166 aa12.49□□□□□ -0.41
HMGB3-204ENST00000448905 KLRC4-KLRK1H3BQV0 150 aa12.49□□□□□ -0.41
HMGB3-204ENST00000448905 PSMD12O00232 456 aaPredicted RBP12.49□□□□□ -0.41
HMGB3-204ENST00000448905 FCHO1O14526 889 aa12.49□□□□□ -0.41
HMGB3-204ENST00000448905 NDUFS4O43181 175 aa12.49□□□□□ -0.41
HMGB3-204ENST00000448905 CHST10O43529 356 aa12.49□□□□□ -0.41
HMGB3-204ENST00000448905 PRMT3O60678 531 aa12.49□□□□□ -0.41
HMGB3-204ENST00000448905 SLC25A12O75746 678 aa12.49□□□□□ -0.41
HMGB3-204ENST00000448905 FHP07954 510 aa12.49□□□□□ -0.41
HMGB3-204ENST00000448905 CDH1P12830 882 aa12.49□□□□□ -0.41
HMGB3-204ENST00000448905 ZNF24P17028 368 aa12.49□□□□□ -0.41
HMGB3-204ENST00000448905 ALOX12P18054 663 aa12.49□□□□□ -0.41
HMGB3-204ENST00000448905 COILP38432 576 aaPredicted RBP12.49□□□□□ -0.41
HMGB3-204ENST00000448905 EFNA3P52797 238 aa12.49□□□□□ -0.41
HMGB3-204ENST00000448905 SLC26A5P58743 744 aa12.49□□□□□ -0.41
HMGB3-204ENST00000448905 IL2P60568 153 aa12.49□□□□□ -0.41
HMGB3-204ENST00000448905 ADORA2A-AS1P86434 159 aa12.49□□□□□ -0.41
HMGB3-204ENST00000448905 DEFB134Q4QY38 66 aa12.49□□□□□ -0.41
HMGB3-204ENST00000448905 DUPD1Q68J44 220 aa12.49□□□□□ -0.41
HMGB3-204ENST00000448905 PDSS2Q86YH6 399 aa12.49□□□□□ -0.41
HMGB3-204ENST00000448905 POGLUT1Q8NBL1 392 aa12.49□□□□□ -0.41
HMGB3-204ENST00000448905 ABHD11Q8NFV4 315 aa12.49□□□□□ -0.41
HMGB3-204ENST00000448905 ELP5Q8TE02 316 aa12.49□□□□□ -0.41
HMGB3-204ENST00000448905 FRMD6Q96NE9 622 aa12.49□□□□□ -0.41
HMGB3-204ENST00000448905 PTCHD1Q96NR3 888 aa12.49□□□□□ -0.41
HMGB3-204ENST00000448905 SERPINB12Q96P63 405 aa12.49□□□□□ -0.41
HMGB3-204ENST00000448905 VKORC1Q9BQB6 163 aa12.49□□□□□ -0.41
HMGB3-204ENST00000448905 SGPP1Q9BX95 441 aa12.49□□□□□ -0.41
HMGB3-204ENST00000448905 TSPAN10Q9H1Z9 355 aaPredicted RBP12.49□□□□□ -0.41
HMGB3-204ENST00000448905 IARS2Q9NSE4 1012 aaKnown RBP12.49□□□□□ -0.41
HMGB3-204ENST00000448905 ARL15Q9NXU5 204 aa12.49□□□□□ -0.41
HMGB3-204ENST00000448905 TRBC2A0A5B9 178 aa12.48□□□□□ -0.41
HMGB3-204ENST00000448905 USP27XA6NNY8 438 aa12.48□□□□□ -0.41
HMGB3-204ENST00000448905 NRDCO43847 1150 aa12.48□□□□□ -0.41
HMGB3-204ENST00000448905 GALR3O60755 368 aaPredicted RBP12.48□□□□□ -0.41
HMGB3-204ENST00000448905 B4GALT2O60909 372 aa12.48□□□□□ -0.41
HMGB3-204ENST00000448905 NEURL1O76050 574 aa12.48□□□□□ -0.41
HMGB3-204ENST00000448905 TTC4O95801 387 aa12.48□□□□□ -0.41
HMGB3-204ENST00000448905 HLCSP50747 726 aa12.48□□□□□ -0.41
HMGB3-204ENST00000448905 AP1S2P56377 157 aa12.48□□□□□ -0.41
HMGB3-204ENST00000448905 ANKRD22Q5VYY1 191 aa12.48□□□□□ -0.41
HMGB3-204ENST00000448905 TMEM211Q6ICI0 200 aa12.48□□□□□ -0.41
HMGB3-204ENST00000448905 STRA8Q7Z7C7 330 aa12.48□□□□□ -0.41
HMGB3-204ENST00000448905 DOLPP1Q86YN1 238 aa12.48□□□□□ -0.41
HMGB3-204ENST00000448905 AFAP1L2Q8N4X5 818 aa12.48□□□□□ -0.41
HMGB3-204ENST00000448905 AMER2Q8N7J2 671 aa12.48□□□□□ -0.41
HMGB3-204ENST00000448905 TRPV3Q8NET8 790 aa12.48□□□□□ -0.41
HMGB3-204ENST00000448905 OR4K1Q8NGD4 311 aa12.48□□□□□ -0.41
HMGB3-204ENST00000448905 AGAP11Q8TF27 550 aa12.48□□□□□ -0.41
HMGB3-204ENST00000448905 GRK7Q8WTQ7 553 aa12.48□□□□□ -0.41
HMGB3-204ENST00000448905 PHF10Q8WUB8 498 aaKnown RBP12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms