RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 RPTNQ6XPR3 784 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 PIWIL4Q7Z3Z4 852 aaKnown RBP6.68□□□□□ -1.34
VPS41-208ENST00000448833 SLC26A11Q86WA9 606 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 LURAP1LQ8IV03 231 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 CNTN4Q8IWV2 1026 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 EID3Q8N140 333 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 NKAPQ8N5F7 415 aaKnown RBP6.68□□□□□ -1.34
VPS41-208ENST00000448833 TMEM178AQ8NBL3 297 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 MFSD9Q8NBP5 474 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 ARMC2Q8NEN0 867 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 GIMAP7Q8NHV1 300 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 FAM45AQ8TCE6 357 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 LINGO1Q96FE5 620 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 CERS2Q96G23 380 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 SNF8Q96H20 258 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 MS4A14Q96JA4 679 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 VPS39Q96JC1 886 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 OSBPL9Q96SU4 736 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 SLC30A3Q99726 388 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 CAPS2Q9BXY5 557 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 MMP25Q9NPA2 562 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 NSMCE4AQ9NXX6 385 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 ZFP69BQ9UJL9 534 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 SNX12Q9UMY4 172 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 PDE10AQ9Y233 779 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 MED16Q9Y2X0 877 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 NAALAD2Q9Y3Q0 740 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 KLF2Q9Y5W3 355 aaPredicted RBP6.68□□□□□ -1.34
VPS41-208ENST00000448833 KCNE2Q9Y6J6 123 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 CREBBPQ92793 2442 aa6.67□□□□□ -1.34
VPS41-208ENST00000448833 A0A088AWK7 358 aa6.67□□□□□ -1.34
VPS41-208ENST00000448833 PSMD12O00232 456 aaPredicted RBP6.67□□□□□ -1.34
VPS41-208ENST00000448833 P2RX6O15547 441 aa6.67□□□□□ -1.34
VPS41-208ENST00000448833 NDUFS4O43181 175 aa6.67□□□□□ -1.34
VPS41-208ENST00000448833 OR1F1O43749 312 aa6.67□□□□□ -1.34
VPS41-208ENST00000448833 SEC24DO94855 1032 aaPredicted RBP6.67□□□□□ -1.34
VPS41-208ENST00000448833 UNC5CO95185 931 aa6.67□□□□□ -1.34
VPS41-208ENST00000448833 CDH1P12830 882 aa6.67□□□□□ -1.34
VPS41-208ENST00000448833 ALOX12P18054 663 aa6.67□□□□□ -1.34
VPS41-208ENST00000448833 AGAP20933 346 aa6.67□□□□□ -1.34
VPS41-208ENST00000448833 ZNF10P21506 573 aaPredicted RBP6.67□□□□□ -1.34
VPS41-208ENST00000448833 GSTM2P28161 218 aa6.67□□□□□ -1.34
VPS41-208ENST00000448833 SMSP52788 366 aa6.67□□□□□ -1.34
VPS41-208ENST00000448833 CDKL1Q00532 357 aa6.67□□□□□ -1.34
VPS41-208ENST00000448833 DHX9Q08211 1270 aaKnown RBP6.67□□□□□ -1.34
VPS41-208ENST00000448833 FRG1Q14331 258 aaKnown RBP6.67□□□□□ -1.34
VPS41-208ENST00000448833 ABRAXAS2Q15018 415 aa6.67□□□□□ -1.34
VPS41-208ENST00000448833 SYT16Q17RD7 645 aa6.67□□□□□ -1.34
VPS41-208ENST00000448833 ZNF766Q5HY98 468 aa6.67□□□□□ -1.34
VPS41-208ENST00000448833 SP5Q6BEB4 398 aaPredicted RBP6.67□□□□□ -1.34
VPS41-208ENST00000448833 VN1R4Q7Z5H5 301 aa6.67□□□□□ -1.34
VPS41-208ENST00000448833 ANKRD37Q7Z713 158 aa6.67□□□□□ -1.34
VPS41-208ENST00000448833 FJX1Q86VR8 437 aa6.67□□□□□ -1.34
VPS41-208ENST00000448833 TICAM1Q8IUC6 712 aa6.67□□□□□ -1.34
VPS41-208ENST00000448833 PLD3Q8IV08 490 aa6.67□□□□□ -1.34
VPS41-208ENST00000448833 TMEM151BQ8IW70 566 aa6.67□□□□□ -1.34
VPS41-208ENST00000448833 ZNF808Q8N4W9 903 aaPredicted RBP6.67□□□□□ -1.34
VPS41-208ENST00000448833 DTWD1Q8N5C7 304 aa6.67□□□□□ -1.34
VPS41-208ENST00000448833 KCT2Q8NC54 265 aa6.67□□□□□ -1.34
VPS41-208ENST00000448833 TTLQ8NG68 377 aa6.67□□□□□ -1.34
VPS41-208ENST00000448833 OR56A3Q8NH54 315 aa6.67□□□□□ -1.34
VPS41-208ENST00000448833 THAP3Q8WTV1 239 aaPredicted RBP6.67□□□□□ -1.34
VPS41-208ENST00000448833 TMEM125Q96AQ2 219 aa6.67□□□□□ -1.34
VPS41-208ENST00000448833 ALKBH8Q96BT7 664 aaKnown RBP6.67□□□□□ -1.34
VPS41-208ENST00000448833 TBC1D20Q96BZ9 403 aa6.67□□□□□ -1.34
VPS41-208ENST00000448833 FBXL8Q96CD0 374 aa6.67□□□□□ -1.34
VPS41-208ENST00000448833 SEC16BQ96JE7 1060 aa6.67□□□□□ -1.34
VPS41-208ENST00000448833 AIF1LQ9BQI0 150 aa6.67□□□□□ -1.34
VPS41-208ENST00000448833 PITHD1Q9GZP4 211 aaPredicted RBP6.67□□□□□ -1.34
VPS41-208ENST00000448833 ATG10Q9H0Y0 220 aa6.67□□□□□ -1.34
VPS41-208ENST00000448833 PLA2G3Q9NZ20 509 aa6.67□□□□□ -1.34
VPS41-208ENST00000448833 ZFATQ9P243 1243 aa6.67□□□□□ -1.34
VPS41-208ENST00000448833 RNF14Q9UBS8 474 aa6.67□□□□□ -1.34
VPS41-208ENST00000448833 ADAMTS6Q9UKP5 1117 aa6.67□□□□□ -1.34
VPS41-208ENST00000448833 DYRK1BQ9Y463 629 aa6.67□□□□□ -1.34
VPS41-208ENST00000448833 LRBAP50851 2863 aa6.67□□□□□ -1.34
VPS41-208ENST00000448833 TRGV8A0A0C4DH27 118 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 FEZF1A0PJY2 475 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 PRSS44E7EML9 344 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 CCDC188H7C350 402 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 SGK494L7N484 410 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 CCL21O00585 134 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 CLDN4O14493 209 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 FCHO1O14526 889 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 FFAR3O14843 346 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 GPR42O15529 346 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 LCMT2O60294 686 aaKnown RBP6.66□□□□□ -1.34
VPS41-208ENST00000448833 PRMT3O60678 531 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 GALR3O60755 368 aaPredicted RBP6.66□□□□□ -1.34
VPS41-208ENST00000448833 ZG16O60844 167 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 SERPIND1P05546 499 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 FHP07954 510 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 RNF224P0DH78 156 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 ESRRAP11474 423 aaPredicted RBP6.66□□□□□ -1.34
VPS41-208ENST00000448833 RNH1P13489 461 aaKnown RBP6.66□□□□□ -1.34
VPS41-208ENST00000448833 IL1RNP18510 177 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 GNAZP19086 355 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 PTGER4P35408 488 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 PAFAH1B1P43034 410 aa6.66□□□□□ -1.34
VPS41-208ENST00000448833 CA7P43166 264 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms