RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 C2CD4AQ8NCU7 369 aaPredicted RBP16.64■□□□□ 0.25
PTPRF-209ENST00000438120 RIT1Q92963 219 aa16.64■□□□□ 0.25
PTPRF-209ENST00000438120 HSPBAP1Q96EW2 488 aa16.64■□□□□ 0.25
PTPRF-209ENST00000438120 ALPK1Q96QP1 1244 aa16.64■□□□□ 0.25
PTPRF-209ENST00000438120 FNIP2Q9P278 1114 aa16.64■□□□□ 0.25
PTPRF-209ENST00000438120 LCHNA4D1U4 455 aa16.64■□□□□ 0.25
PTPRF-209ENST00000438120 AGR2O95994 175 aa16.64■□□□□ 0.25
PTPRF-209ENST00000438120 EBLN1P0CF75 366 aa16.64■□□□□ 0.25
PTPRF-209ENST00000438120 HK1P19367 917 aa16.64■□□□□ 0.25
PTPRF-209ENST00000438120 TAS1R3Q7RTX0 852 aa16.64■□□□□ 0.25
PTPRF-209ENST00000438120 IRF7Q92985 503 aa16.64■□□□□ 0.25
PTPRF-209ENST00000438120 GPR62Q9BZJ7 368 aa16.64■□□□□ 0.25
PTPRF-209ENST00000438120 LDAHQ9H6V9 325 aa16.64■□□□□ 0.25
PTPRF-209ENST00000438120 SMSP52788 366 aa16.64■□□□□ 0.25
PTPRF-209ENST00000438120 FOXRED2Q8IWF2 684 aa16.64■□□□□ 0.25
PTPRF-209ENST00000438120 SPERTQ8NA61 448 aa16.64■□□□□ 0.25
PTPRF-209ENST00000438120 TAMM41Q96BW9 452 aa16.64■□□□□ 0.25
PTPRF-209ENST00000438120 ZBTB26Q9HCK0 441 aa16.64■□□□□ 0.25
PTPRF-209ENST00000438120 PAK6Q9NQU5 681 aaPredicted RBP16.64■□□□□ 0.25
PTPRF-209ENST00000438120 ZNF878C9JN71 531 aa16.63■□□□□ 0.25
PTPRF-209ENST00000438120 VILLO15195 856 aa16.63■□□□□ 0.25
PTPRF-209ENST00000438120 SLC2A2P11168 524 aaPredicted RBP16.63■□□□□ 0.25
PTPRF-209ENST00000438120 BMP8BP34820 402 aa16.63■□□□□ 0.25
PTPRF-209ENST00000438120 ZNF267Q14586 743 aaPredicted RBP16.63■□□□□ 0.25
PTPRF-209ENST00000438120 TMEM44Q2T9K0 475 aa16.63■□□□□ 0.25
PTPRF-209ENST00000438120 GPRIN1Q7Z2K8 1008 aa16.63■□□□□ 0.25
PTPRF-209ENST00000438120 BMP8AQ7Z5Y6 402 aa16.63■□□□□ 0.25
PTPRF-209ENST00000438120 TMEM126BQ8IUX1 230 aa16.63■□□□□ 0.25
PTPRF-209ENST00000438120 DOK4Q8TEW6 326 aa16.63■□□□□ 0.25
PTPRF-209ENST00000438120 SGCDQ92629 289 aa16.63■□□□□ 0.25
PTPRF-209ENST00000438120 PAAF1Q9BRP4 392 aa16.63■□□□□ 0.25
PTPRF-209ENST00000438120 C12orf4Q9NQ89 552 aa16.63■□□□□ 0.25
PTPRF-209ENST00000438120 TMED5Q9Y3A6 229 aa16.63■□□□□ 0.25
PTPRF-209ENST00000438120 RIN1Q13671 783 aa16.63■□□□□ 0.25
PTPRF-209ENST00000438120 ZNF782Q6ZMW2 699 aaPredicted RBP16.63■□□□□ 0.25
PTPRF-209ENST00000438120 DCUN1D3Q8IWE4 304 aa16.63■□□□□ 0.25
PTPRF-209ENST00000438120 DDX1Q92499 740 aaKnown RBP16.63■□□□□ 0.25
PTPRF-209ENST00000438120 OR14I1A6ND48 311 aa16.63■□□□□ 0.25
PTPRF-209ENST00000438120 E7EQ34 232 aa16.63■□□□□ 0.25
PTPRF-209ENST00000438120 SRPRAP08240 638 aaKnown RBP16.63■□□□□ 0.25
PTPRF-209ENST00000438120 ARRB1P49407 418 aaPredicted RBP16.63■□□□□ 0.25
PTPRF-209ENST00000438120 MAN2A2P49641 1150 aa16.63■□□□□ 0.25
PTPRF-209ENST00000438120 SOX4Q06945 474 aaPredicted RBP16.63■□□□□ 0.25
PTPRF-209ENST00000438120 TMEM130Q8N3G9 435 aa16.63■□□□□ 0.25
PTPRF-209ENST00000438120 LRRC15Q8TF66 581 aa16.63■□□□□ 0.25
PTPRF-209ENST00000438120 IGSF8Q969P0 613 aa16.63■□□□□ 0.25
PTPRF-209ENST00000438120 FBXL20Q96IG2 436 aa16.63■□□□□ 0.25
PTPRF-209ENST00000438120 SIGLEC10Q96LC7 697 aa16.63■□□□□ 0.25
PTPRF-209ENST00000438120 NSUN5Q96P11 429 aaKnown RBP16.63■□□□□ 0.25
PTPRF-209ENST00000438120 TSSK6Q9BXA6 273 aa16.63■□□□□ 0.25
PTPRF-209ENST00000438120 HRASLS2Q9NWW9 162 aa16.63■□□□□ 0.25
PTPRF-209ENST00000438120 MGAT4AQ9UM21 535 aa16.63■□□□□ 0.25
PTPRF-209ENST00000438120 A0A1W2PP55 124 aa16.63■□□□□ 0.25
PTPRF-209ENST00000438120 C2orf78A6NCI8 922 aa16.63■□□□□ 0.25
PTPRF-209ENST00000438120 RHOP08100 348 aa16.63■□□□□ 0.25
PTPRF-209ENST00000438120 TPTEP56180 551 aa16.63■□□□□ 0.25
PTPRF-209ENST00000438120 MAZP56270 477 aaKnown RBP16.63■□□□□ 0.25
PTPRF-209ENST00000438120 VSX2P58304 361 aaPredicted RBP16.63■□□□□ 0.25
PTPRF-209ENST00000438120 RPS3AP61247 264 aaKnown RBP16.63■□□□□ 0.25
PTPRF-209ENST00000438120 MEP1AQ16819 746 aa16.63■□□□□ 0.25
PTPRF-209ENST00000438120 GPALPP1Q8IXQ4 340 aa16.63■□□□□ 0.25
PTPRF-209ENST00000438120 TCRBV21S2A2A0A5A6 115 aa16.62■□□□□ 0.25
PTPRF-209ENST00000438120 H0YGN5 161 aa16.62■□□□□ 0.25
PTPRF-209ENST00000438120 LMAN2Q12907 356 aa16.62■□□□□ 0.25
PTPRF-209ENST00000438120 SNX29P2Q8IUI4 249 aa16.62■□□□□ 0.25
PTPRF-209ENST00000438120 ZNF548Q8NEK5 533 aaPredicted RBP16.62■□□□□ 0.25
PTPRF-209ENST00000438120 OR2L8Q8NGY9 312 aa16.62■□□□□ 0.25
PTPRF-209ENST00000438120 SHDQ96IW2 340 aa16.62■□□□□ 0.25
PTPRF-209ENST00000438120 FCRL3Q96P31 734 aaPredicted RBP16.62■□□□□ 0.25
PTPRF-209ENST00000438120 A0A1W2PP18 115 aa16.62■□□□□ 0.25
PTPRF-209ENST00000438120 TSPAN6O43657 245 aa16.62■□□□□ 0.25
PTPRF-209ENST00000438120 CSF2RAP15509 400 aa16.62■□□□□ 0.25
PTPRF-209ENST00000438120 ST3GAL3Q11203 375 aa16.62■□□□□ 0.25
PTPRF-209ENST00000438120 BNIP3Q12983 259 aa16.62■□□□□ 0.25
PTPRF-209ENST00000438120 GALNT10Q86SR1 603 aa16.62■□□□□ 0.25
PTPRF-209ENST00000438120 KLHDC7BQ96G42 594 aa16.62■□□□□ 0.25
PTPRF-209ENST00000438120 KCNH6Q9H252 994 aa16.62■□□□□ 0.25
PTPRF-209ENST00000438120 DNAJC27Q9NZQ0 273 aa16.62■□□□□ 0.25
PTPRF-209ENST00000438120 CHP2O43745 196 aa16.62■□□□□ 0.25
PTPRF-209ENST00000438120 RCBTB2O95199 551 aa16.62■□□□□ 0.25
PTPRF-209ENST00000438120 DLDP09622 509 aaKnown RBP16.62■□□□□ 0.25
PTPRF-209ENST00000438120 GSTM3P21266 225 aa16.62■□□□□ 0.25
PTPRF-209ENST00000438120 C1orf61Q13536 156 aa16.62■□□□□ 0.25
PTPRF-209ENST00000438120 CCDC116Q8IYX3 515 aa16.62■□□□□ 0.25
PTPRF-209ENST00000438120 PNLDC1Q8NA58 520 aaKnown RBP16.62■□□□□ 0.25
PTPRF-209ENST00000438120 TXNDC5Q8NBS9 432 aaKnown RBP16.62■□□□□ 0.25
PTPRF-209ENST00000438120 CCDC120Q96HB5 630 aa16.62■□□□□ 0.25
PTPRF-209ENST00000438120 RC3H2Q9HBD1 1191 aaKnown RBP16.62■□□□□ 0.25
PTPRF-209ENST00000438120 PIK3CBP42338 1070 aa16.62■□□□□ 0.25
PTPRF-209ENST00000438120 NADK2Q4G0N4 442 aa16.62■□□□□ 0.25
PTPRF-209ENST00000438120 ADGRD2Q7Z7M1 963 aa16.62■□□□□ 0.25
PTPRF-209ENST00000438120 SORCS1Q8WY21 1168 aa16.62■□□□□ 0.25
PTPRF-209ENST00000438120 MMABQ96EY8 250 aaPredicted RBP16.62■□□□□ 0.25
PTPRF-209ENST00000438120 NOX1Q9Y5S8 564 aa16.62■□□□□ 0.25
PTPRF-209ENST00000438120 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.62■□□□□ 0.25
PTPRF-209ENST00000438120 ZSCAN5BA6NJL1 495 aa16.62■□□□□ 0.25
PTPRF-209ENST00000438120 SCGB1D2O95969 90 aa16.62■□□□□ 0.25
PTPRF-209ENST00000438120 FAM163BP0C2L3 166 aa16.62■□□□□ 0.25
PTPRF-209ENST00000438120 DIO3P55073 304 aa16.62■□□□□ 0.25
PTPRF-209ENST00000438120 ZNF800Q2TB10 664 aaPredicted RBP eCLIP16.62■□□□□ 0.258e-8■■□□□ 11.5
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms