RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 NLGN4XQ8N0W4 816 aa11.82□□□□□ -0.52
USP40-205ENST00000430158 SHISA5Q8N114 240 aa11.82□□□□□ -0.52
USP40-205ENST00000430158 ESX1Q8N693 406 aa11.82□□□□□ -0.52
USP40-205ENST00000430158 KCT2Q8NC54 265 aa11.82□□□□□ -0.52
USP40-205ENST00000430158 CAMKVQ8NCB2 501 aa11.82□□□□□ -0.52
USP40-205ENST00000430158 NLGN4YQ8NFZ3 816 aaPredicted RBP11.82□□□□□ -0.52
USP40-205ENST00000430158 OR7G3Q8NG95 312 aa11.82□□□□□ -0.52
USP40-205ENST00000430158 WDR20Q8TBZ3 569 aa11.82□□□□□ -0.52
USP40-205ENST00000430158 ZNF473Q8WTR7 871 aaKnown RBP11.82□□□□□ -0.52
USP40-205ENST00000430158 SLC13A3Q8WWT9 602 aa11.82□□□□□ -0.52
USP40-205ENST00000430158 ZCCHC14Q8WYQ9 949 aaKnown RBP11.82□□□□□ -0.52
USP40-205ENST00000430158 N4BP2L2Q92802 583 aaPredicted RBP11.82□□□□□ -0.52
USP40-205ENST00000430158 CCDC126Q96EE4 140 aa11.82□□□□□ -0.52
USP40-205ENST00000430158 SEC16BQ96JE7 1060 aa11.82□□□□□ -0.52
USP40-205ENST00000430158 CNTNAP3BQ96NU0 1288 aa11.82□□□□□ -0.52
USP40-205ENST00000430158 ZNF382Q96SR6 550 aa11.82□□□□□ -0.52
USP40-205ENST00000430158 GATA5Q9BWX5 397 aaPredicted RBP11.82□□□□□ -0.52
USP40-205ENST00000430158 CNTNAP3Q9BZ76 1288 aa11.82□□□□□ -0.52
USP40-205ENST00000430158 CENPHQ9H3R5 247 aa11.82□□□□□ -0.52
USP40-205ENST00000430158 KLHL31Q9H511 634 aa11.82□□□□□ -0.52
USP40-205ENST00000430158 SEMA4BQ9NPR2 832 aaPredicted RBP11.82□□□□□ -0.52
USP40-205ENST00000430158 LHX9Q9NQ69 397 aa11.82□□□□□ -0.52
USP40-205ENST00000430158 SRPK3Q9UPE1 567 aa11.82□□□□□ -0.52
USP40-205ENST00000430158 ZFYVE26Q68DK2 2539 aa11.81□□□□□ -0.52
USP40-205ENST00000430158 A0A087WV48 116 aa11.81□□□□□ -0.52
USP40-205ENST00000430158 A0A1B0GX78 115 aa11.81□□□□□ -0.52
USP40-205ENST00000430158 TXNDC9O14530 226 aa11.81□□□□□ -0.52
USP40-205ENST00000430158 TRIM13O60858 407 aa11.81□□□□□ -0.52
USP40-205ENST00000430158 CNOT3O75175 753 aaKnown RBP11.81□□□□□ -0.52
USP40-205ENST00000430158 KATNA1O75449 491 aa11.81□□□□□ -0.52
USP40-205ENST00000430158 CLEC3AO75596 197 aa11.81□□□□□ -0.52
USP40-205ENST00000430158 EIF2S1P05198 315 aaKnown RBP11.81□□□□□ -0.52
USP40-205ENST00000430158 BPGMP07738 259 aa11.81□□□□□ -0.52
USP40-205ENST00000430158 SERPINA6P08185 405 aa11.81□□□□□ -0.52
USP40-205ENST00000430158 CCR10P46092 362 aa11.81□□□□□ -0.52
USP40-205ENST00000430158 ARSFP54793 590 aa11.81□□□□□ -0.52
USP40-205ENST00000430158 WDR4P57081 412 aaKnown RBP11.81□□□□□ -0.52
USP40-205ENST00000430158 MAGOHP61326 146 aaKnown RBP11.81□□□□□ -0.52
USP40-205ENST00000430158 SRSF6Q13247 344 aaKnown RBP11.81□□□□□ -0.52
USP40-205ENST00000430158 FAM53BQ14153 422 aa11.81□□□□□ -0.52
USP40-205ENST00000430158 RBBP5Q15291 538 aaKnown RBP11.81□□□□□ -0.52
USP40-205ENST00000430158 FAM214AQ32MH5 1076 aa11.81□□□□□ -0.52
USP40-205ENST00000430158 LIPMQ5VYY2 423 aa11.81□□□□□ -0.52
USP40-205ENST00000430158 FAM199XQ6PEV8 388 aaPredicted RBP11.81□□□□□ -0.52
USP40-205ENST00000430158 FAM198BQ6UWH4 519 aa11.81□□□□□ -0.52
USP40-205ENST00000430158 FRMD7Q6ZUT3 714 aa11.81□□□□□ -0.52
USP40-205ENST00000430158 TTLL10Q6ZVT0 673 aa11.81□□□□□ -0.52
USP40-205ENST00000430158 COX15Q7KZN9 410 aa11.81□□□□□ -0.52
USP40-205ENST00000430158 PRSS41Q7RTY9 318 aa11.81□□□□□ -0.52
USP40-205ENST00000430158 UBE3DQ7Z6J8 389 aa11.81□□□□□ -0.52
USP40-205ENST00000430158 SYVN1Q86TM6 617 aa11.81□□□□□ -0.52
USP40-205ENST00000430158 PDSS2Q86YH6 399 aa11.81□□□□□ -0.52
USP40-205ENST00000430158 TMEM151BQ8IW70 566 aa11.81□□□□□ -0.52
USP40-205ENST00000430158 CACNA2D3Q8IZS8 1091 aa11.81□□□□□ -0.52
USP40-205ENST00000430158 KRT78Q8N1N4 520 aa11.81□□□□□ -0.52
USP40-205ENST00000430158 ZNF248Q8NDW4 579 aa11.81□□□□□ -0.52
USP40-205ENST00000430158 TRPV3Q8NET8 790 aa11.81□□□□□ -0.52
USP40-205ENST00000430158 ANKK1Q8NFD2 765 aa11.81□□□□□ -0.52
USP40-205ENST00000430158 OR4F6Q8NGB9 312 aa11.81□□□□□ -0.52
USP40-205ENST00000430158 PROKR1Q8TCW9 393 aa11.81□□□□□ -0.52
USP40-205ENST00000430158 TRPC4APQ8TEL6 797 aa11.81□□□□□ -0.52
USP40-205ENST00000430158 ZDHHC19Q8WVZ1 309 aaPredicted RBP11.81□□□□□ -0.52
USP40-205ENST00000430158 RERGQ96A58 199 aaPredicted RBP11.81□□□□□ -0.52
USP40-205ENST00000430158 CDK15Q96Q40 435 aa11.81□□□□□ -0.52
USP40-205ENST00000430158 NDC1Q9BTX1 674 aa11.81□□□□□ -0.52
USP40-205ENST00000430158 MECRQ9BV79 373 aa11.81□□□□□ -0.52
USP40-205ENST00000430158 DPH1Q9BZG8 443 aa11.81□□□□□ -0.52
USP40-205ENST00000430158 CHST8Q9H2A9 424 aa11.81□□□□□ -0.52
USP40-205ENST00000430158 TNFRSF12AQ9NP84 129 aa11.81□□□□□ -0.52
USP40-205ENST00000430158 PADI1Q9ULC6 663 aa11.81□□□□□ -0.52
USP40-205ENST00000430158 ANGPTL3Q9Y5C1 460 aa11.81□□□□□ -0.52
USP40-205ENST00000430158 SLC22A7Q9Y694 548 aa11.81□□□□□ -0.52
USP40-205ENST00000430158 KMT2BQ9UMN6 2715 aaPredicted RBP11.81□□□□□ -0.52
USP40-205ENST00000430158 LOC400499M0QZD8 3231 aa11.81□□□□□ -0.52
USP40-205ENST00000430158 ITPR1Q14643 2758 aa11.8□□□□□ -0.52
USP40-205ENST00000430158 CNTRLQ7Z7A1 2325 aa11.8□□□□□ -0.52
USP40-205ENST00000430158 LRIT2A6NDA9 550 aa11.8□□□□□ -0.52
USP40-205ENST00000430158 TM9SF1O15321 606 aa11.8□□□□□ -0.52
USP40-205ENST00000430158 SUPT7LO94864 414 aa11.8□□□□□ -0.52
USP40-205ENST00000430158 CLDN9O95484 217 aa11.8□□□□□ -0.52
USP40-205ENST00000430158 GSTM2P28161 218 aa11.8□□□□□ -0.52
USP40-205ENST00000430158 HNRNPH1P31943 449 aaKnown RBP11.8□□□□□ -0.52
USP40-205ENST00000430158 SERPINB4P48594 390 aa11.8□□□□□ -0.52
USP40-205ENST00000430158 CCNG1P51959 295 aa11.8□□□□□ -0.52
USP40-205ENST00000430158 CYP4F2P78329 520 aa11.8□□□□□ -0.52
USP40-205ENST00000430158 LCP2Q13094 533 aa11.8□□□□□ -0.52
USP40-205ENST00000430158 MUM1Q2TAK8 710 aa11.8□□□□□ -0.52
USP40-205ENST00000430158 PAGE2BQ5JRK9 111 aa11.8□□□□□ -0.52
USP40-205ENST00000430158 C1orf189Q5VU69 101 aa11.8□□□□□ -0.52
USP40-205ENST00000430158 MRPL14Q6P1L8 145 aaKnown RBP11.8□□□□□ -0.52
USP40-205ENST00000430158 MED27Q6P2C8 311 aa11.8□□□□□ -0.52
USP40-205ENST00000430158 SPACA3Q8IXA5 215 aa11.8□□□□□ -0.52
USP40-205ENST00000430158 AMER3Q8N944 861 aa11.8□□□□□ -0.52
USP40-205ENST00000430158 TTC29Q8NA56 475 aaPredicted RBP11.8□□□□□ -0.52
USP40-205ENST00000430158 TTLQ8NG68 377 aa11.8□□□□□ -0.52
USP40-205ENST00000430158 UTP15Q8TED0 518 aaKnown RBP11.8□□□□□ -0.52
USP40-205ENST00000430158 AGAP11Q8TF27 550 aa11.8□□□□□ -0.52
USP40-205ENST00000430158 CT55Q8WUE5 264 aa11.8□□□□□ -0.52
USP40-205ENST00000430158 KCNE4Q8WWG9 221 aa11.8□□□□□ -0.52
USP40-205ENST00000430158 MS4A6EQ96DS6 147 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms