RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 OR1C1Q15619 314 aa13.67□□□□□ -0.22
SDC1-204ENST00000429035 NSDHLQ15738 373 aa13.67□□□□□ -0.22
SDC1-204ENST00000429035 PHKG1Q16816 387 aa13.67□□□□□ -0.22
SDC1-204ENST00000429035 MTFR2Q6P444 385 aa13.67□□□□□ -0.22
SDC1-204ENST00000429035 TUBA3EQ6PEY2 450 aa13.67□□□□□ -0.22
SDC1-204ENST00000429035 CYP4X1Q8N118 509 aa13.67□□□□□ -0.22
SDC1-204ENST00000429035 RASGEF1CQ8N431 466 aa13.67□□□□□ -0.22
SDC1-204ENST00000429035 ZNF808Q8N4W9 903 aaPredicted RBP13.67□□□□□ -0.22
SDC1-204ENST00000429035 SLC5A8Q8N695 610 aa13.67□□□□□ -0.22
SDC1-204ENST00000429035 MFSD9Q8NBP5 474 aa13.67□□□□□ -0.22
SDC1-204ENST00000429035 C2CD4AQ8NCU7 369 aaPredicted RBP13.67□□□□□ -0.22
SDC1-204ENST00000429035 SIGLEC10Q96LC7 697 aa13.67□□□□□ -0.22
SDC1-204ENST00000429035 ARL15Q9NXU5 204 aa13.67□□□□□ -0.22
SDC1-204ENST00000429035 TINAGQ9UJW2 476 aa13.67□□□□□ -0.22
SDC1-204ENST00000429035 GTF3C1Q12789 2109 aa13.66□□□□□ -0.22
SDC1-204ENST00000429035 KCNE1BA0A087WTH5 132 aa13.66□□□□□ -0.22
SDC1-204ENST00000429035 NPIPA5E9PKD4 350 aa13.66□□□□□ -0.22
SDC1-204ENST00000429035 MAN1A2O60476 641 aa13.66□□□□□ -0.22
SDC1-204ENST00000429035 MLYCDO95822 493 aa13.66□□□□□ -0.22
SDC1-204ENST00000429035 B3GALT4O96024 378 aa13.66□□□□□ -0.22
SDC1-204ENST00000429035 COX6B1P14854 86 aa13.66□□□□□ -0.22
SDC1-204ENST00000429035 CD46P15529 392 aa13.66□□□□□ -0.22
SDC1-204ENST00000429035 HTR1EP28566 365 aa13.66□□□□□ -0.22
SDC1-204ENST00000429035 CCR8P51685 355 aa13.66□□□□□ -0.22
SDC1-204ENST00000429035 PGGT1BP53609 377 aa13.66□□□□□ -0.22
SDC1-204ENST00000429035 CDKN2DP55273 166 aa13.66□□□□□ -0.22
SDC1-204ENST00000429035 RHAGQ02094 409 aa13.66□□□□□ -0.22
SDC1-204ENST00000429035 RGS1Q08116 209 aa13.66□□□□□ -0.22
SDC1-204ENST00000429035 ART3Q13508 389 aa13.66□□□□□ -0.22
SDC1-204ENST00000429035 USP10Q14694 798 aaKnown RBP13.66□□□□□ -0.22
SDC1-204ENST00000429035 HERC3Q15034 1050 aa13.66□□□□□ -0.22
SDC1-204ENST00000429035 C3AR1Q16581 482 aa13.66□□□□□ -0.22
SDC1-204ENST00000429035 BBS9Q3SYG4 887 aa13.66□□□□□ -0.22
SDC1-204ENST00000429035 DEFB134Q4QY38 66 aa13.66□□□□□ -0.22
SDC1-204ENST00000429035 SPINK14Q6IE38 97 aa13.66□□□□□ -0.22
SDC1-204ENST00000429035 RPTNQ6XPR3 784 aa13.66□□□□□ -0.22
SDC1-204ENST00000429035 BNC2Q6ZN30 1099 aaPredicted RBP13.66□□□□□ -0.22
SDC1-204ENST00000429035 TBC1D19Q8N5T2 526 aa13.66□□□□□ -0.22
SDC1-204ENST00000429035 TMEM178AQ8NBL3 297 aa13.66□□□□□ -0.22
SDC1-204ENST00000429035 FAM98AQ8NCA5 519 aaKnown RBP13.66□□□□□ -0.22
SDC1-204ENST00000429035 M1APQ8TC57 530 aa13.66□□□□□ -0.22
SDC1-204ENST00000429035 CFAP36Q96G28 342 aa13.66□□□□□ -0.22
SDC1-204ENST00000429035 TSNARE1Q96NA8 513 aa13.66□□□□□ -0.22
SDC1-204ENST00000429035 HAUS8Q9BT25 410 aa13.66□□□□□ -0.22
SDC1-204ENST00000429035 NPIPA1Q9UND3 350 aa13.66□□□□□ -0.22
SDC1-204ENST00000429035 JRKLQ9Y4A0 524 aa13.66□□□□□ -0.22
SDC1-204ENST00000429035 ABCA12Q86UK0 2595 aa13.66□□□□□ -0.22
SDC1-204ENST00000429035 NCOA6Q14686 2063 aaPredicted RBP13.65□□□□□ -0.22
SDC1-204ENST00000429035 NDC80O14777 642 aa13.65□□□□□ -0.22
SDC1-204ENST00000429035 SLC16A5O15375 505 aa13.65□□□□□ -0.22
SDC1-204ENST00000429035 B4GALT2O60909 372 aa13.65□□□□□ -0.22
SDC1-204ENST00000429035 WISP2O76076 250 aa13.65□□□□□ -0.22
SDC1-204ENST00000429035 FHP07954 510 aa13.65□□□□□ -0.22
SDC1-204ENST00000429035 ZNF888P0CJ79 500 aaPredicted RBP13.65□□□□□ -0.22
SDC1-204ENST00000429035 JAK1P23458 1154 aa13.65□□□□□ -0.22
SDC1-204ENST00000429035 HNF4AP41235 474 aa13.65□□□□□ -0.22
SDC1-204ENST00000429035 FNTAP49354 379 aa13.65□□□□□ -0.22
SDC1-204ENST00000429035 SLC26A5P58743 744 aa13.65□□□□□ -0.22
SDC1-204ENST00000429035 SKP1P63208 163 aa13.65□□□□□ -0.22
SDC1-204ENST00000429035 CYP1B1Q16678 543 aa13.65□□□□□ -0.22
SDC1-204ENST00000429035 SPANXN3Q5MJ09 141 aa13.65□□□□□ -0.22
SDC1-204ENST00000429035 RNASEH2BQ5TBB1 312 aaKnown RBP13.65□□□□□ -0.22
SDC1-204ENST00000429035 GDF7Q7Z4P5 450 aa13.65□□□□□ -0.22
SDC1-204ENST00000429035 GALNTL5Q7Z4T8 443 aa13.65□□□□□ -0.22
SDC1-204ENST00000429035 TMPRSS11BQ86T26 416 aa13.65□□□□□ -0.22
SDC1-204ENST00000429035 KIF2BQ8N4N8 673 aa13.65□□□□□ -0.22
SDC1-204ENST00000429035 ZNF740Q8NDX6 193 aa13.65□□□□□ -0.22
SDC1-204ENST00000429035 MDS2Q8NDY4 140 aa13.65□□□□□ -0.22
SDC1-204ENST00000429035 TM4SF19Q96DZ7 209 aa13.65□□□□□ -0.22
SDC1-204ENST00000429035 CERS2Q96G23 380 aa13.65□□□□□ -0.22
SDC1-204ENST00000429035 GPR137Q96N19 417 aa13.65□□□□□ -0.22
SDC1-204ENST00000429035 PHF12Q96QT6 1004 aa13.65□□□□□ -0.22
SDC1-204ENST00000429035 OR1F2PQ96R84 312 aa13.65□□□□□ -0.22
SDC1-204ENST00000429035 NPAS2Q99743 824 aa13.65□□□□□ -0.22
SDC1-204ENST00000429035 SGPP1Q9BX95 441 aa13.65□□□□□ -0.22
SDC1-204ENST00000429035 TRIM54Q9BYV2 358 aa13.65□□□□□ -0.22
SDC1-204ENST00000429035 RHBGQ9H310 441 aa13.65□□□□□ -0.22
SDC1-204ENST00000429035 CDCP1Q9H5V8 836 aa13.65□□□□□ -0.22
SDC1-204ENST00000429035 MMP25Q9NPA2 562 aa13.65□□□□□ -0.22
SDC1-204ENST00000429035 NEU2Q9Y3R4 380 aa13.65□□□□□ -0.22
SDC1-204ENST00000429035 KLF2Q9Y5W3 355 aaPredicted RBP13.65□□□□□ -0.22
SDC1-204ENST00000429035 MAGEB17A8MXT2 336 aa13.64□□□□□ -0.23
SDC1-204ENST00000429035 DNALI1O14645 258 aaPredicted RBP13.64□□□□□ -0.23
SDC1-204ENST00000429035 ABOP16442 354 aa13.64□□□□□ -0.23
SDC1-204ENST00000429035 ALOX12P18054 663 aa13.64□□□□□ -0.23
SDC1-204ENST00000429035 SAT1P21673 171 aa13.64□□□□□ -0.23
SDC1-204ENST00000429035 CD96P40200 585 aa13.64□□□□□ -0.23
SDC1-204ENST00000429035 IL2P60568 153 aa13.64□□□□□ -0.23
SDC1-204ENST00000429035 TIAL1Q01085 375 aaKnown RBP eCLIP13.64□□□□□ -0.23
SDC1-204ENST00000429035 MAPKAPK3Q16644 382 aa13.64□□□□□ -0.23
SDC1-204ENST00000429035 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.64□□□□□ -0.23
SDC1-204ENST00000429035 HP1BP3Q5SSJ5 553 aaPredicted RBP13.64□□□□□ -0.23
SDC1-204ENST00000429035 CATSPEREQ5SY80 951 aa13.64□□□□□ -0.23
SDC1-204ENST00000429035 HECTD2Q5U5R9 776 aa13.64□□□□□ -0.23
SDC1-204ENST00000429035 ABHD13Q7L211 337 aa13.64□□□□□ -0.23
SDC1-204ENST00000429035 SLC35F6Q8N357 371 aa13.64□□□□□ -0.23
SDC1-204ENST00000429035 HORMAD2Q8N7B1 307 aa13.64□□□□□ -0.23
SDC1-204ENST00000429035 TBC1D20Q96BZ9 403 aa13.64□□□□□ -0.23
SDC1-204ENST00000429035 SNF8Q96H20 258 aa13.64□□□□□ -0.23
SDC1-204ENST00000429035 FRMD6Q96NE9 622 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms