RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 YBX2Q9Y2T7 364 aaKnown RBP8.05□□□□□ -1.12
CD44-208ENST00000428726 GPSM3Q9Y4H4 160 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 PCDHB3Q9Y5E6 796 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 PCDHGA11Q9Y5H2 935 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 UPK1AO00322 258 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 SPINT1O43278 529 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 ATG13O75143 517 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 C7P10643 843 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 PXNP49023 591 aaPredicted RBP8.05□□□□□ -1.12
CD44-208ENST00000428726 RAB8AP61006 207 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 HBA1P69905 142 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 PHEXP78562 749 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 ID2Q02363 134 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 MVKQ03426 396 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 TP53BP2Q13625 1128 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 FXNQ16595 210 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 CYP2A13Q16696 494 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 CTU2Q2VPK5 515 aaKnown RBP8.05□□□□□ -1.12
CD44-208ENST00000428726 ERAP2Q6P179 960 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 BCDIN3DQ7Z5W3 292 aaKnown RBP8.05□□□□□ -1.12
CD44-208ENST00000428726 GALNT13Q8IUC8 556 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 MICU2Q8IYU8 434 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 PAPD5Q8NDF8 572 aaKnown RBP8.05□□□□□ -1.12
CD44-208ENST00000428726 UTP15Q8TED0 518 aaKnown RBP8.05□□□□□ -1.12
CD44-208ENST00000428726 COL26A1Q96A83 441 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 ISG20Q96AZ6 181 aaKnown RBP8.05□□□□□ -1.12
CD44-208ENST00000428726 NTMT1Q9BV86 223 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 TRMT61BQ9BVS5 477 aaKnown RBP8.05□□□□□ -1.12
CD44-208ENST00000428726 MKRN2Q9H000 416 aaKnown RBP8.05□□□□□ -1.12
CD44-208ENST00000428726 KAT8Q9H7Z6 458 aaKnown RBP8.05□□□□□ -1.12
CD44-208ENST00000428726 SACM1LQ9NTJ5 587 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 SIRT5Q9NXA8 310 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 TAS2R16Q9NYV7 291 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 TRPS1Q9UHF7 1281 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP8.05□□□□□ -1.12
CD44-208ENST00000428726 SMIM30A4D0T7 59 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 PRKNO60260 465 aaPredicted RBP8.05□□□□□ -1.12
CD44-208ENST00000428726 INMTO95050 263 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 ADRB3P13945 408 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 GGT1P19440 569 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 CDK9P50750 372 aaKnown RBP8.05□□□□□ -1.12
CD44-208ENST00000428726 MLLT10P55197 1068 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 HOXC5Q00444 222 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 RAPSNQ13702 412 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 SOWAHCQ53LP3 525 aaPredicted RBP8.05□□□□□ -1.12
CD44-208ENST00000428726 CDKL4Q5MAI5 379 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 C9orf64Q5T6V5 341 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 HENMT1Q5T8I9 393 aaKnown RBP8.05□□□□□ -1.12
CD44-208ENST00000428726 LAIR1Q6GTX8 287 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 TTC23LQ6PF05 361 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 BRAT1Q6PJG6 821 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 CYP4Z1Q86W10 505 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 C7orf57Q8NEG2 295 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 BPIFB1Q8TDL5 484 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 NUS1Q96E22 293 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 DTNBP1Q96EV8 351 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 BDH2Q9BUT1 245 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 CRISPLD2Q9H0B8 497 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 RHBGQ9H310 441 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 CLMPQ9H6B4 373 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 TPT1P8Q9HAU6 139 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 MAGEL2Q9UJ55 1249 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 PPIL1Q9Y3C6 166 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 SAMHD1Q9Y3Z3 626 aaKnown RBP8.05□□□□□ -1.12
CD44-208ENST00000428726 PLXND1Q9Y4D7 1925 aa8.05□□□□□ -1.12
CD44-208ENST00000428726 DENND4CQ5VZ89 1909 aa8.04□□□□□ -1.12
CD44-208ENST00000428726 TBC1D3DA0A087WVF3 549 aa8.04□□□□□ -1.12
CD44-208ENST00000428726 TBC1D3IA0A087WXS9 549 aa8.04□□□□□ -1.12
CD44-208ENST00000428726 TBC1D3EA0A087X179 549 aa8.04□□□□□ -1.12
CD44-208ENST00000428726 TBC1D3KA0A087X1G2 549 aa8.04□□□□□ -1.12
CD44-208ENST00000428726 TBC1D3FA6NER0 549 aaPredicted RBP8.04□□□□□ -1.12
CD44-208ENST00000428726 ZNF860A6NHJ4 632 aa8.04□□□□□ -1.12
CD44-208ENST00000428726 ANKDD1BA6NHY2 528 aa8.04□□□□□ -1.12
CD44-208ENST00000428726 TBC1D3LB9A6J9 549 aa8.04□□□□□ -1.12
CD44-208ENST00000428726 EIF3FO00303 357 aaPredicted RBP8.04□□□□□ -1.12
CD44-208ENST00000428726 FRS3O43559 492 aa8.04□□□□□ -1.12
CD44-208ENST00000428726 SOX14O95416 240 aa8.04□□□□□ -1.12
CD44-208ENST00000428726 SOD1P00441 154 aa8.04□□□□□ -1.12
CD44-208ENST00000428726 CATP04040 527 aaKnown RBP8.04□□□□□ -1.12
CD44-208ENST00000428726 TBC1D3HP0C7X1 549 aa8.04□□□□□ -1.12
CD44-208ENST00000428726 NPPBP16860 134 aa8.04□□□□□ -1.12
CD44-208ENST00000428726 P2RY2P41231 377 aa8.04□□□□□ -1.12
CD44-208ENST00000428726 DNASE1L3Q13609 305 aa8.04□□□□□ -1.12
CD44-208ENST00000428726 ATP6AP1Q15904 470 aa8.04□□□□□ -1.12
CD44-208ENST00000428726 SYT16Q17RD7 645 aa8.04□□□□□ -1.12
CD44-208ENST00000428726 LEXMQ3ZCV2 418 aa8.04□□□□□ -1.12
CD44-208ENST00000428726 C1orf53Q5VUE5 145 aa8.04□□□□□ -1.12
CD44-208ENST00000428726 ZDHHC20Q5W0Z9 365 aa8.04□□□□□ -1.12
CD44-208ENST00000428726 TBC1D3GQ6DHY5 549 aa8.04□□□□□ -1.12
CD44-208ENST00000428726 TBC1D3CQ6IPX1 549 aa8.04□□□□□ -1.12
CD44-208ENST00000428726 TRIM46Q7Z4K8 759 aa8.04□□□□□ -1.12
CD44-208ENST00000428726 RNF130Q86XS8 419 aa8.04□□□□□ -1.12
CD44-208ENST00000428726 RBM45Q8IUH3 476 aaKnown RBP8.04□□□□□ -1.12
CD44-208ENST00000428726 ERI1Q8IV48 349 aaKnown RBP8.04□□□□□ -1.12
CD44-208ENST00000428726 TBC1D3Q8IZP1 549 aaPredicted RBP8.04□□□□□ -1.12
CD44-208ENST00000428726 CLIP4Q8N3C7 705 aa8.04□□□□□ -1.12
CD44-208ENST00000428726 HDDC3Q8N4P3 179 aa8.04□□□□□ -1.12
CD44-208ENST00000428726 AADATQ8N5Z0 425 aa8.04□□□□□ -1.12
CD44-208ENST00000428726 SLC15A4Q8N697 577 aa8.04□□□□□ -1.12
CD44-208ENST00000428726 CELF5Q8N6W0 485 aaKnown RBP8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms