RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 TGFB1P01137 390 aa9.65□□□□□ -0.87
CD44-207ENST00000425428 PIM1P11309 404 aaPredicted RBP9.65□□□□□ -0.87
CD44-207ENST00000425428 AVPR1BP47901 424 aa9.65□□□□□ -0.87
CD44-207ENST00000425428 LSSP48449 732 aa9.65□□□□□ -0.87
CD44-207ENST00000425428 NEK2P51955 445 aa9.65□□□□□ -0.87
CD44-207ENST00000425428 ARFIP2P53365 341 aa9.65□□□□□ -0.87
CD44-207ENST00000425428 ARFIP1P53367 373 aa9.65□□□□□ -0.87
CD44-207ENST00000425428 AQP5P55064 265 aa9.65□□□□□ -0.87
CD44-207ENST00000425428 RPS13P62277 151 aaKnown RBP9.65□□□□□ -0.87
CD44-207ENST00000425428 CFHR1Q03591 330 aa9.65□□□□□ -0.87
CD44-207ENST00000425428 ZFP36L1Q07352 338 aaKnown RBP9.65□□□□□ -0.87
CD44-207ENST00000425428 CUL3Q13618 768 aa9.65□□□□□ -0.87
CD44-207ENST00000425428 ISXQ2M1V0 245 aa9.65□□□□□ -0.87
CD44-207ENST00000425428 MUM1Q2TAK8 710 aa9.65□□□□□ -0.87
CD44-207ENST00000425428 TOR1AIP1Q5JTV8 583 aa9.65□□□□□ -0.87
CD44-207ENST00000425428 GKAP1Q5VSY0 366 aaPredicted RBP9.65□□□□□ -0.87
CD44-207ENST00000425428 GARNL3Q5VVW2 1013 aa9.65□□□□□ -0.87
CD44-207ENST00000425428 FBXO42Q6P3S6 717 aa9.65□□□□□ -0.87
CD44-207ENST00000425428 CEACAM20Q6UY09 585 aa9.65□□□□□ -0.87
CD44-207ENST00000425428 ZNF574Q6ZN55 896 aaPredicted RBP9.65□□□□□ -0.87
CD44-207ENST00000425428 RNF165Q6ZSG1 346 aa9.65□□□□□ -0.87
CD44-207ENST00000425428 RAB11FIP2Q7L804 512 aa9.65□□□□□ -0.87
CD44-207ENST00000425428 TMEM126BQ8IUX1 230 aa9.65□□□□□ -0.87
CD44-207ENST00000425428 CACTIN-AS1Q8N1I8 211 aa9.65□□□□□ -0.87
CD44-207ENST00000425428 DNAJC22Q8N4W6 341 aa9.65□□□□□ -0.87
CD44-207ENST00000425428 ZNF740Q8NDX6 193 aa9.65□□□□□ -0.87
CD44-207ENST00000425428 CEP70Q8NHQ1 597 aa9.65□□□□□ -0.87
CD44-207ENST00000425428 WDR20Q8TBZ3 569 aa9.65□□□□□ -0.87
CD44-207ENST00000425428 USP7Q93009 1102 aa9.65□□□□□ -0.87
CD44-207ENST00000425428 LIN37Q96GY3 246 aaPredicted RBP9.65□□□□□ -0.87
CD44-207ENST00000425428 PPP1R36Q96LQ0 422 aa9.65□□□□□ -0.87
CD44-207ENST00000425428 PPM1MQ96MI6 270 aa9.65□□□□□ -0.87
CD44-207ENST00000425428 KCNC2Q96PR1 638 aa9.65□□□□□ -0.87
CD44-207ENST00000425428 OR2A5Q96R48 311 aa9.65□□□□□ -0.87
CD44-207ENST00000425428 OR6C1Q96RD1 312 aa9.65□□□□□ -0.87
CD44-207ENST00000425428 ASPSCR1Q9BZE9 553 aa9.65□□□□□ -0.87
CD44-207ENST00000425428 C20orf27Q9GZN8 174 aa9.65□□□□□ -0.87
CD44-207ENST00000425428 ZNF395Q9H8N7 513 aaPredicted RBP9.65□□□□□ -0.87
CD44-207ENST00000425428 ANKHQ9HCJ1 492 aa9.65□□□□□ -0.87
CD44-207ENST00000425428 DMRT3Q9NQL9 472 aa9.65□□□□□ -0.87
CD44-207ENST00000425428 KLHL14Q9P2G3 628 aa9.65□□□□□ -0.87
CD44-207ENST00000425428 EIF3LQ9Y262 564 aaKnown RBP9.65□□□□□ -0.87
CD44-207ENST00000425428 TMED5Q9Y3A6 229 aa9.65□□□□□ -0.87
CD44-207ENST00000425428 KNTC1P50748 2209 aa9.64□□□□□ -0.87
CD44-207ENST00000425428 MAGEB17A8MXT2 336 aa9.64□□□□□ -0.87
CD44-207ENST00000425428 LCMT2O60294 686 aaKnown RBP9.64□□□□□ -0.87
CD44-207ENST00000425428 CTSVO60911 334 aa9.64□□□□□ -0.87
CD44-207ENST00000425428 SEMA3DO95025 777 aa9.64□□□□□ -0.87
CD44-207ENST00000425428 CD22P20273 847 aa9.64□□□□□ -0.87
CD44-207ENST00000425428 TSFMP43897 325 aaKnown RBP9.64□□□□□ -0.87
CD44-207ENST00000425428 EMP3P54852 163 aa9.64□□□□□ -0.87
CD44-207ENST00000425428 FOXA1P55317 472 aa9.64□□□□□ -0.87
CD44-207ENST00000425428 STX1BP61266 288 aa9.64□□□□□ -0.87
CD44-207ENST00000425428 YBX1P67809 324 aaKnown RBP9.64□□□□□ -0.87
CD44-207ENST00000425428 BTKQ06187 659 aa9.64□□□□□ -0.87
CD44-207ENST00000425428 ABRAXAS2Q15018 415 aa9.64□□□□□ -0.87
CD44-207ENST00000425428 DEFB110Q30KQ9 67 aa9.64□□□□□ -0.87
CD44-207ENST00000425428 GALNTL6Q49A17 601 aa9.64□□□□□ -0.87
CD44-207ENST00000425428 DCAF12Q5T6F0 453 aa9.64□□□□□ -0.87
CD44-207ENST00000425428 KHDRBS2Q5VWX1 349 aaKnown RBP9.64□□□□□ -0.87
CD44-207ENST00000425428 FOXR1Q6PIV2 292 aa9.64□□□□□ -0.87
CD44-207ENST00000425428 CYP20A1Q6UW02 462 aa9.64□□□□□ -0.87
CD44-207ENST00000425428 TRIM46Q7Z4K8 759 aa9.64□□□□□ -0.87
CD44-207ENST00000425428 SPATA21Q7Z572 469 aa9.64□□□□□ -0.87
CD44-207ENST00000425428 FNDC5Q8NAU1 212 aa9.64□□□□□ -0.87
CD44-207ENST00000425428 WDR36Q8NI36 951 aaKnown RBP9.64□□□□□ -0.87
CD44-207ENST00000425428 NT5CQ8TCD5 201 aa9.64□□□□□ -0.87
CD44-207ENST00000425428 ZNF473Q8WTR7 871 aaKnown RBP9.64□□□□□ -0.87
CD44-207ENST00000425428 GAL3ST3Q96A11 431 aa9.64□□□□□ -0.87
CD44-207ENST00000425428 FCRL4Q96PJ5 515 aa9.64□□□□□ -0.87
CD44-207ENST00000425428 TEFMQ96QE5 360 aaKnown RBP9.64□□□□□ -0.87
CD44-207ENST00000425428 TBCDQ9BTW9 1192 aa9.64□□□□□ -0.87
CD44-207ENST00000425428 MEAF6Q9HAF1 191 aa9.64□□□□□ -0.87
CD44-207ENST00000425428 LRTM1Q9HBL6 345 aa9.64□□□□□ -0.87
CD44-207ENST00000425428 TCF7L2Q9NQB0 619 aa9.64□□□□□ -0.87
CD44-207ENST00000425428 C1orf109Q9NX04 203 aa9.64□□□□□ -0.87
CD44-207ENST00000425428 SLC39A1Q9NY26 324 aa9.64□□□□□ -0.87
CD44-207ENST00000425428 NDOR1Q9UHB4 597 aa9.64□□□□□ -0.87
CD44-207ENST00000425428 DCTN4Q9UJW0 460 aa9.64□□□□□ -0.87
CD44-207ENST00000425428 ZNF225Q9UK10 706 aa9.64□□□□□ -0.87
CD44-207ENST00000425428 PILRAQ9UKJ1 303 aa9.64□□□□□ -0.87
CD44-207ENST00000425428 MAPRE3Q9UPY8 281 aa9.64□□□□□ -0.87
CD44-207ENST00000425428 RUVBL1Q9Y265 456 aaKnown RBP9.64□□□□□ -0.87
CD44-207ENST00000425428 LOXL2Q9Y4K0 774 aa9.64□□□□□ -0.87
CD44-207ENST00000425428 FRYLO94915 3013 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 GNG14A0A1W2PPG7 69 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 HYKKA2RU49 373 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 TMEM233B4DJY2 109 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 B4E171 279 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 NDUFAB1O14561 156 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 ERI3O43414 337 aaKnown RBP9.63□□□□□ -0.87
CD44-207ENST00000425428 LBPP18428 481 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 ALAS2P22557 587 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 TSPAN7P41732 249 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 SSR2P43308 183 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 SEC24CP53992 1094 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 IRX1P78414 480 aaPredicted RBP9.63□□□□□ -0.87
CD44-207ENST00000425428 KCNAB1Q14722 419 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 GPR19Q15760 415 aa9.63□□□□□ -0.87
CD44-207ENST00000425428 ZIC1Q15915 447 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms