RNA–Protein interactions for RNA: ENST00000409747.5

CBX3-203, Transcript of chromobox 3, humanhuman

TSL 1 (best) BASIC

Gene CBX3, Length 1,717 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-203ENST00000409747 URADA6NGE7 173 aa13.9□□□□□ -0.18
CBX3-203ENST00000409747 A8MUI8 341 aa13.9□□□□□ -0.18
CBX3-203ENST00000409747 MAGEB17A8MXT2 336 aa13.9□□□□□ -0.18
CBX3-203ENST00000409747 GUCA1CO95843 209 aa13.9□□□□□ -0.18
CBX3-203ENST00000409747 ZNF37AP17032 561 aaPredicted RBP13.9□□□□□ -0.18
CBX3-203ENST00000409747 ALOX12P18054 663 aa13.9□□□□□ -0.18
CBX3-203ENST00000409747 AHRP35869 848 aa13.9□□□□□ -0.18
CBX3-203ENST00000409747 ACTN3Q08043 901 aaPredicted RBP13.9□□□□□ -0.18
CBX3-203ENST00000409747 ABRAXAS2Q15018 415 aa13.9□□□□□ -0.18
CBX3-203ENST00000409747 MEP1AQ16819 746 aa13.9□□□□□ -0.18
CBX3-203ENST00000409747 ACER2Q5QJU3 275 aa13.9□□□□□ -0.18
CBX3-203ENST00000409747 HP1BP3Q5SSJ5 553 aaPredicted RBP13.9□□□□□ -0.18
CBX3-203ENST00000409747 H3F3CQ6NXT2 135 aa13.9□□□□□ -0.18
CBX3-203ENST00000409747 TRMT10BQ6PF06 316 aaKnown RBP13.9□□□□□ -0.18
CBX3-203ENST00000409747 NKAPQ8N5F7 415 aaKnown RBP13.9□□□□□ -0.18
CBX3-203ENST00000409747 ZNF740Q8NDX6 193 aa13.9□□□□□ -0.18
CBX3-203ENST00000409747 PLPP5Q8NEB5 264 aa13.9□□□□□ -0.18
CBX3-203ENST00000409747 TBC1D20Q96BZ9 403 aa13.9□□□□□ -0.18
CBX3-203ENST00000409747 PEX11GQ96HA9 241 aa13.9□□□□□ -0.18
CBX3-203ENST00000409747 CAPZA3Q96KX2 299 aa13.9□□□□□ -0.18
CBX3-203ENST00000409747 OR4K3Q96R72 315 aa13.9□□□□□ -0.18
CBX3-203ENST00000409747 OLFM1Q99784 485 aa13.9□□□□□ -0.18
CBX3-203ENST00000409747 PELI2Q9HAT8 420 aa13.9□□□□□ -0.18
CBX3-203ENST00000409747 CLK4Q9HAZ1 481 aaKnown RBP13.9□□□□□ -0.18
CBX3-203ENST00000409747 PLAC1Q9HBJ0 212 aa13.9□□□□□ -0.18
CBX3-203ENST00000409747 MMP25Q9NPA2 562 aa13.9□□□□□ -0.18
CBX3-203ENST00000409747 NSMCE4AQ9NXX6 385 aa13.9□□□□□ -0.18
CBX3-203ENST00000409747 PCDHGB6Q9Y5F9 930 aa13.9□□□□□ -0.18
CBX3-203ENST00000409747 CENPEQ02224 2701 aa13.9□□□□□ -0.19
CBX3-203ENST00000409747 ZNF860A6NHJ4 632 aa13.89□□□□□ -0.19
CBX3-203ENST00000409747 CCDC188H7C350 402 aa13.89□□□□□ -0.19
CBX3-203ENST00000409747 GALR3O60755 368 aaPredicted RBP13.89□□□□□ -0.19
CBX3-203ENST00000409747 SEC31AO94979 1220 aaKnown RBP13.89□□□□□ -0.19
CBX3-203ENST00000409747 SERPIND1P05546 499 aa13.89□□□□□ -0.19
CBX3-203ENST00000409747 FHP07954 510 aa13.89□□□□□ -0.19
CBX3-203ENST00000409747 ITGA8P53708 1063 aa13.89□□□□□ -0.19
CBX3-203ENST00000409747 TAS2R50P59544 299 aa13.89□□□□□ -0.19
CBX3-203ENST00000409747 MEF2AQ02078 507 aaPredicted RBP13.89□□□□□ -0.19
CBX3-203ENST00000409747 RHAGQ02094 409 aa13.89□□□□□ -0.19
CBX3-203ENST00000409747 MGAT5Q09328 741 aa13.89□□□□□ -0.19
CBX3-203ENST00000409747 ZRSR2Q15696 482 aaKnown RBP13.89□□□□□ -0.19
CBX3-203ENST00000409747 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.89□□□□□ -0.195e-7■□□□□ 10.5
CBX3-203ENST00000409747 SFT2D3Q587I9 215 aa13.89□□□□□ -0.19
CBX3-203ENST00000409747 ZNF787Q6DD87 383 aa13.89□□□□□ -0.19
CBX3-203ENST00000409747 PAPD4Q6PIY7 484 aaKnown RBP13.89□□□□□ -0.19
CBX3-203ENST00000409747 SBSNQ6UWP8 590 aa13.89□□□□□ -0.19
CBX3-203ENST00000409747 GFRALQ6UXV0 394 aa13.89□□□□□ -0.19
CBX3-203ENST00000409747 SLC34A3Q8N130 599 aa13.89□□□□□ -0.19
CBX3-203ENST00000409747 SLC5A8Q8N695 610 aa13.89□□□□□ -0.19
CBX3-203ENST00000409747 NT5CQ8TCD5 201 aa13.89□□□□□ -0.19
CBX3-203ENST00000409747 NEIL2Q969S2 332 aa13.89□□□□□ -0.19
CBX3-203ENST00000409747 AIF1LQ9BQI0 150 aa13.89□□□□□ -0.19
CBX3-203ENST00000409747 RBCK1Q9BYM8 510 aa13.89□□□□□ -0.19
CBX3-203ENST00000409747 KCNF1Q9H3M0 494 aa13.89□□□□□ -0.19
CBX3-203ENST00000409747 SAR1BQ9Y6B6 198 aa13.89□□□□□ -0.19
CBX3-203ENST00000409747 SCN2AQ99250 2005 aa13.88□□□□□ -0.19
CBX3-203ENST00000409747 CDK2AP1O14519 115 aa13.88□□□□□ -0.19
CBX3-203ENST00000409747 CDC123O75794 336 aaPredicted RBP13.88□□□□□ -0.19
CBX3-203ENST00000409747 MLYCDO95822 493 aa13.88□□□□□ -0.19
CBX3-203ENST00000409747 COL8A1P27658 744 aa13.88□□□□□ -0.19
CBX3-203ENST00000409747 PAFAH1B1P43034 410 aa13.88□□□□□ -0.19
CBX3-203ENST00000409747 SCTRP47872 440 aa13.88□□□□□ -0.19
CBX3-203ENST00000409747 HNMTP50135 292 aa13.88□□□□□ -0.19
CBX3-203ENST00000409747 GNG11P61952 73 aa13.88□□□□□ -0.19
CBX3-203ENST00000409747 CDKL1Q00532 357 aa13.88□□□□□ -0.19
CBX3-203ENST00000409747 RBPJQ06330 500 aa13.88□□□□□ -0.19
CBX3-203ENST00000409747 PPP1R3AQ16821 1122 aa13.88□□□□□ -0.19
CBX3-203ENST00000409747 ZXDCQ2QGD7 858 aaPredicted RBP13.88□□□□□ -0.19
CBX3-203ENST00000409747 DEFB134Q4QY38 66 aa13.88□□□□□ -0.19
CBX3-203ENST00000409747 ZNF766Q5HY98 468 aa13.88□□□□□ -0.19
CBX3-203ENST00000409747 CATSPEREQ5SY80 951 aa13.88□□□□□ -0.19
CBX3-203ENST00000409747 FJX1Q86VR8 437 aa13.88□□□□□ -0.19
CBX3-203ENST00000409747 CREG2Q8IUH2 290 aa13.88□□□□□ -0.19
CBX3-203ENST00000409747 LGI4Q8N135 537 aa13.88□□□□□ -0.19
CBX3-203ENST00000409747 BEST3Q8N1M1 668 aa13.88□□□□□ -0.19
CBX3-203ENST00000409747 HORMAD2Q8N7B1 307 aa13.88□□□□□ -0.19
CBX3-203ENST00000409747 TRPV3Q8NET8 790 aa13.88□□□□□ -0.19
CBX3-203ENST00000409747 RELTQ969Z4 430 aa13.88□□□□□ -0.19
CBX3-203ENST00000409747 VPS39Q96JC1 886 aa13.88□□□□□ -0.19
CBX3-203ENST00000409747 UTP23Q9BRU9 249 aaKnown RBP13.88□□□□□ -0.19
CBX3-203ENST00000409747 LANCL2Q9NS86 450 aa13.88□□□□□ -0.19
CBX3-203ENST00000409747 KCNE2Q9Y6J6 123 aa13.88□□□□□ -0.19
CBX3-203ENST00000409747 SCN3AQ9NY46 2000 aa13.88□□□□□ -0.19
CBX3-203ENST00000409747 NOTCH2Q04721 2471 aa13.88□□□□□ -0.19
CBX3-203ENST00000409747 FAM95CA0A1B0GW59 222 aa13.87□□□□□ -0.19
CBX3-203ENST00000409747 SAT1P21673 171 aa13.87□□□□□ -0.19
CBX3-203ENST00000409747 KCNK10P57789 538 aa13.87□□□□□ -0.19
CBX3-203ENST00000409747 OR4D2P58180 307 aa13.87□□□□□ -0.19
CBX3-203ENST00000409747 REEP5Q00765 189 aa13.87□□□□□ -0.19
CBX3-203ENST00000409747 USP10Q14694 798 aaKnown RBP13.87□□□□□ -0.19
CBX3-203ENST00000409747 C1QL3Q5VWW1 255 aa13.87□□□□□ -0.19
CBX3-203ENST00000409747 TMEM207Q6UWW9 146 aa13.87□□□□□ -0.19
CBX3-203ENST00000409747 FRA10AC1Q70Z53 315 aa13.87□□□□□ -0.19
CBX3-203ENST00000409747 TMPRSS11BQ86T26 416 aa13.87□□□□□ -0.19
CBX3-203ENST00000409747 ADAMTSL2Q86TH1 951 aa13.87□□□□□ -0.19
CBX3-203ENST00000409747 THOC6Q86W42 341 aaKnown RBP13.87□□□□□ -0.19
CBX3-203ENST00000409747 ZC3HC1Q86WB0 502 aaKnown RBP13.87□□□□□ -0.19
CBX3-203ENST00000409747 FBXO36Q8NEA4 188 aa13.87□□□□□ -0.19
CBX3-203ENST00000409747 OR5T3Q8NGG3 340 aa13.87□□□□□ -0.19
CBX3-203ENST00000409747 MOCOSQ96EN8 888 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms