RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 UGT2A3Q6UWM9 527 aa5.92□□□□□ -1.46
SCN1A-203ENST00000409050 S100A7AQ86SG5 101 aa5.92□□□□□ -1.46
SCN1A-203ENST00000409050 KIF18BQ86Y91 864 aa5.92□□□□□ -1.46
SCN1A-203ENST00000409050 RPLP0P6Q8NHW5 317 aa5.92□□□□□ -1.46
SCN1A-203ENST00000409050 ELP5Q8TE02 316 aa5.92□□□□□ -1.46
SCN1A-203ENST00000409050 ARNTL2Q8WYA1 636 aa5.92□□□□□ -1.46
SCN1A-203ENST00000409050 GAL3ST3Q96A11 431 aa5.92□□□□□ -1.46
SCN1A-203ENST00000409050 COQ8BQ96D53 544 aa5.92□□□□□ -1.46
SCN1A-203ENST00000409050 ALPK1Q96QP1 1244 aa5.92□□□□□ -1.46
SCN1A-203ENST00000409050 RNF208Q9H0X6 261 aa5.92□□□□□ -1.46
SCN1A-203ENST00000409050 ABCG4Q9H172 646 aa5.92□□□□□ -1.46
SCN1A-203ENST00000409050 OAZ3Q9UMX2 235 aa5.92□□□□□ -1.46
SCN1A-203ENST00000409050 E7ESA3 106 aa5.92□□□□□ -1.46
SCN1A-203ENST00000409050 PROM1O43490 865 aa5.92□□□□□ -1.46
SCN1A-203ENST00000409050 ECI2O75521 394 aa5.92□□□□□ -1.46
SCN1A-203ENST00000409050 RBBP9O75884 186 aa5.92□□□□□ -1.46
SCN1A-203ENST00000409050 GSRP00390 522 aa5.92□□□□□ -1.46
SCN1A-203ENST00000409050 BCKDHAP12694 445 aa5.92□□□□□ -1.46
SCN1A-203ENST00000409050 IL7P13232 177 aa5.92□□□□□ -1.46
SCN1A-203ENST00000409050 CDK10Q15131 360 aa5.92□□□□□ -1.46
SCN1A-203ENST00000409050 ZFAND4Q86XD8 727 aa5.92□□□□□ -1.46
SCN1A-203ENST00000409050 NXPE1Q8N323 547 aa5.92□□□□□ -1.46
SCN1A-203ENST00000409050 OR2AP1Q8NGE2 309 aa5.92□□□□□ -1.46
SCN1A-203ENST00000409050 SHKBP1Q8TBC3 707 aa5.92□□□□□ -1.46
SCN1A-203ENST00000409050 CHPT1Q8WUD6 406 aa5.92□□□□□ -1.46
SCN1A-203ENST00000409050 HERVK_113Q902F9 699 aa5.92□□□□□ -1.46
SCN1A-203ENST00000409050 C16orf58Q96GQ5 468 aa5.92□□□□□ -1.46
SCN1A-203ENST00000409050 ZFP3Q96NJ6 502 aa5.92□□□□□ -1.46
SCN1A-203ENST00000409050 SLC38A3Q99624 504 aa5.92□□□□□ -1.46
SCN1A-203ENST00000409050 SPIN2AQ99865 258 aa5.92□□□□□ -1.46
SCN1A-203ENST00000409050 SPIN2BQ9BPZ2 258 aa5.92□□□□□ -1.46
SCN1A-203ENST00000409050 FN3KQ9H479 309 aa5.92□□□□□ -1.46
SCN1A-203ENST00000409050 REEP4Q9H6H4 257 aa5.92□□□□□ -1.46
SCN1A-203ENST00000409050 WDR26Q9H7D7 661 aa5.92□□□□□ -1.46
SCN1A-203ENST00000409050 TREM1Q9NP99 234 aa5.92□□□□□ -1.46
SCN1A-203ENST00000409050 ENAMQ9NRM1 1142 aa5.92□□□□□ -1.46
SCN1A-203ENST00000409050 FAM86C1Q9NVL1 165 aa5.92□□□□□ -1.46
SCN1A-203ENST00000409050 PACSIN3Q9UKS6 424 aa5.92□□□□□ -1.46
SCN1A-203ENST00000409050 FARSAQ9Y285 508 aaKnown RBP5.92□□□□□ -1.46
SCN1A-203ENST00000409050 B3GNT3Q9Y2A9 372 aa5.92□□□□□ -1.46
SCN1A-203ENST00000409050 STYXL1Q9Y6J8 313 aa5.92□□□□□ -1.46
SCN1A-203ENST00000409050 ARHGEF28Q8N1W1 1705 aaKnown RBP5.92□□□□□ -1.46
SCN1A-203ENST00000409050 A0A1W2PPW3 197 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 NOTOA8MTQ0 251 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 H7C417 338 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 hCG_2039718K7EN88 272 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 SPTLC1O15269 473 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 EEDO75530 441 aaKnown RBP5.91□□□□□ -1.46
SCN1A-203ENST00000409050 FARS2O95363 451 aaKnown RBP5.91□□□□□ -1.46
SCN1A-203ENST00000409050 ADH1BP00325 375 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 ADAP00813 363 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 SRCP12931 536 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 HSD17B1P14061 328 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 MAP2K3P46734 347 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 CYP4F8P98187 520 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 HSPB3Q12988 150 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 AIMP2Q13155 320 aaKnown RBP5.91□□□□□ -1.46
SCN1A-203ENST00000409050 SLBPQ14493 270 aaKnown RBP eCLIP5.91□□□□□ -1.46
SCN1A-203ENST00000409050 CDCA2Q69YH5 1023 aaPredicted RBP5.91□□□□□ -1.46
SCN1A-203ENST00000409050 GPR153Q6NV75 609 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 C3orf33Q6P1S2 294 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 CXCL17Q6UXB2 119 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 SLC9B2Q86UD5 537 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 TRIM74Q86UV6 250 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 TRIM73Q86UV7 250 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 THOC6Q86W42 341 aaKnown RBP5.91□□□□□ -1.46
SCN1A-203ENST00000409050 DRAXINQ8NBI3 349 aaPredicted RBP5.91□□□□□ -1.46
SCN1A-203ENST00000409050 COQ8AQ8NI60 647 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 CANT1Q8WVQ1 401 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 IL12RB2Q99665 862 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 TPT1P8Q9HAU6 139 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 BRD7Q9NPI1 651 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 PPIEQ9UNP9 301 aaKnown RBP5.91□□□□□ -1.46
SCN1A-203ENST00000409050 ATRNL1Q5VV63 1379 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 IRS2Q9Y4H2 1338 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 SEPT4O43236 478 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 TNFP01375 233 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 RHCEP18577 417 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 S1PR1P21453 382 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 FOXN2P32314 431 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 FRKP42685 505 aaPredicted RBP5.91□□□□□ -1.46
SCN1A-203ENST00000409050 SELENOVP59797 346 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 SF3B4Q15427 424 aaKnown RBP eCLIP5.91□□□□□ -1.46
SCN1A-203ENST00000409050 UGCGQ16739 394 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 PTCHD3Q3KNS1 767 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 PLA2G4EQ3MJ16 856 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 EOGTQ5NDL2 527 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 TMEM164Q5U3C3 297 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 MBLAC2Q68D91 279 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 LINC00299Q6ZSB3 139 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 ARMCX6Q7L4S7 300 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 NRSN1Q8IZ57 195 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 C12orf29Q8N999 325 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 SIDT2Q8NBJ9 832 aaKnown RBP5.91□□□□□ -1.46
SCN1A-203ENST00000409050 SCGB1C1Q8TD33 95 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 SLC5A11Q8WWX8 675 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 C12orf43Q96C57 262 aaKnown RBP5.91□□□□□ -1.46
SCN1A-203ENST00000409050 BIRC7Q96CA5 298 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 PCED1BQ96HM7 432 aa5.91□□□□□ -1.46
SCN1A-203ENST00000409050 SHDQ96IW2 340 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms