RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 ZNF35P13682 527 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 ALAS2P22557 587 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 ENTPD1P49961 510 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 STC1P52823 247 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 CASP9P55211 416 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 PUM1Q14671 1186 aaKnown RBP eCLIP9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 CHRNA6Q15825 494 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 ELOA3BQ3SY89 546 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 SPANXN4Q5MJ08 99 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 GPRC6AQ5T6X5 926 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 SLC8B1Q6J4K2 584 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 PAQR7Q86WK9 346 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 AQP11Q8NBQ7 271 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 ELOA3Q8NG57 546 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 RIPOR3Q96MK2 946 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 PSKH2Q96QS6 385 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 BTBD1Q9H0C5 482 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 SMOC2Q9H3U7 446 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 KIF1AQ12756 1690 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 ZNF705FA8MVS1 300 aaPredicted RBP9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 DLGAP1O14490 977 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 ADAMTS3O15072 1205 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 ZNF705DP0CH99 300 aaPredicted RBP9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 ZNF705BP0CI00 300 aaPredicted RBP9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 ATP5A1P25705 553 aaKnown RBP9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 APLP1P51693 650 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 SLC13A2Q13183 592 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 GALNT7Q86SF2 657 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 POC1BQ8TC44 478 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 JPH3Q8WXH2 748 aaPredicted RBP9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 ISOC1Q96CN7 298 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 SCGB3A2Q96PL1 93 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 C7orf50Q9BRJ6 194 aaKnown RBP9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 TMEM246Q9BRR3 403 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 FUZQ9BT04 418 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 SLC22A14Q9Y267 594 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 PRSS51A0A1B0GVH4 220 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 FAM170BA6NMN3 283 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 BOLA2-SMG1P6H3BVE0 249 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 FKTNO75072 461 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 PENKP01210 267 aaPredicted RBP9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 BCHEP06276 602 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 IL7P13232 177 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 AHCYP23526 432 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 HOXD12P35452 270 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 ZNF81P51508 661 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 ST3GAL3Q11203 375 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 FAM189A2Q15884 450 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 HES5Q5TA89 166 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 ZNF782Q6ZMW2 699 aaPredicted RBP9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 TREML1Q86YW5 311 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 CILP2Q8IUL8 1156 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 NPAS3Q8IXF0 933 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 ZC3H3Q8IXZ2 948 aaKnown RBP9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 C2CD4AQ8NCU7 369 aaPredicted RBP9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 OR2AJ1Q8NGZ0 328 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 LRCH3Q96II8 777 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 HSPA12BQ96MM6 686 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 GAL3ST1Q99999 423 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 PSD2Q9BQI7 771 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 TRPV4Q9HBA0 871 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 ASB3Q9Y575 518 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 TCHHQ07283 1943 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 RFPL1O75677 317 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 SLITRK5O94991 958 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 IFNA2P01563 188 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 ZNF678Q5SXM1 525 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 AKR1C8PQ5T2L2 129 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 TPGS2Q68CL5 300 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 TCEAL6Q6IPX3 200 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 RBM23Q86U06 439 aaKnown RBP9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 PQLC3Q8N755 202 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 COQ8BQ96D53 544 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 TMEM80Q96HE8 168 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 ALPK1Q96QP1 1244 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 GDAP2Q9NXN4 497 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 KCNN3Q9UGI6 736 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 HCN4Q9Y3Q4 1203 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 ZNF541Q9H0D2 1346 aa9.95□□□□□ -0.82
LIMCH1-203ENST00000396595 RAB19A4D1S5 217 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 KAT7O95251 611 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 IFNA10P01566 189 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 IFNA4P05014 189 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 IGFBP4P22692 258 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 CDH11P55287 796 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 GDPD4Q6W3E5 623 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 CEP97Q8IW35 865 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 MARVELD2Q8N4S9 558 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 FAM46DQ8NEK8 389 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 OR5AK3PQ8NH89 298 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 NFKBIDQ8NI38 313 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 NPY6RQ99463 290 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 CCDC106Q9BWC9 280 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 MKS1Q9NXB0 559 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 CMAHPQ9Y471 501 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 ZNF705EA8MWA4 302 aaPredicted RBP9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 GMFGO60234 142 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 PGAM2P15259 253 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 EPCAMP16422 314 aa9.94□□□□□ -0.82
LIMCH1-203ENST00000396595 EDNRAP25101 427 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms