RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 GOLGA6L10A6NI86 522 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 TIAF1O95411 115 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 ATP4BP51164 291 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 SLBPQ14493 270 aaKnown RBP eCLIP6.66□□□□□ -1.34
LIMA1-202ENST00000394943 MLC1Q15049 377 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 SF1Q15637 639 aaKnown RBP6.66□□□□□ -1.34
LIMA1-202ENST00000394943 KHDRBS2Q5VWX1 349 aaKnown RBP6.66□□□□□ -1.34
LIMA1-202ENST00000394943 PWWP2BQ6NUJ5 590 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 IRGCQ6NXR0 463 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 IKBIPQ70UQ0 350 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 OVCH1Q7RTY7 1134 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 TRIM73Q86UV7 250 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 PPP1R3BQ86XI6 285 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 SRFBP1Q8NEF9 429 aaKnown RBP6.66□□□□□ -1.34
LIMA1-202ENST00000394943 ACTRT2Q8TDY3 377 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 SELENOSQ9BQE4 189 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 MCM8Q9UJA3 840 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 SERTAD3Q9UJW9 196 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 NXT1Q9UKK6 140 aaKnown RBP6.66□□□□□ -1.34
LIMA1-202ENST00000394943 CES1P1Q9UKY3 287 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 RARRES3Q9UL19 164 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 SNX6Q9UNH7 406 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 ASB4Q9Y574 426 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 GSAPA4D1B5 854 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 GOLGA8RI6L899 631 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 CYR61O00622 381 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 LSM1O15116 133 aaKnown RBP6.66□□□□□ -1.34
LIMA1-202ENST00000394943 NRP2O60462 931 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 VPS4BO75351 444 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 GFAPP14136 432 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 VARSP26640 1264 aaKnown RBP6.66□□□□□ -1.34
LIMA1-202ENST00000394943 HNRNPH1P31943 449 aaKnown RBP6.66□□□□□ -1.34
LIMA1-202ENST00000394943 CSTF2P33240 577 aaKnown RBP eCLIP6.66□□□□□ -1.34
LIMA1-202ENST00000394943 SNRPNP63162 240 aaKnown RBP6.66□□□□□ -1.34
LIMA1-202ENST00000394943 TUBB3Q13509 450 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 FAM214AQ32MH5 1076 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 QSOX2Q6ZRP7 698 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 CUZD1Q86UP6 607 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 ESX1Q8N693 406 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 TTC29Q8NA56 475 aaPredicted RBP6.66□□□□□ -1.34
LIMA1-202ENST00000394943 CFAP61Q8NHU2 1237 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 ZNF75CPQ92670 426 aaPredicted RBP6.66□□□□□ -1.34
LIMA1-202ENST00000394943 BRINP2Q9C0B6 783 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 FOXJ2Q9P0K8 574 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 RNF11Q9Y3C5 154 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 DNAJC15Q9Y5T4 150 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 DCDC2BA2VCK2 349 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 H7BY64 318 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 SLC28A1O00337 649 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 PRAMEF10O60809 474 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 GUCA1CO95843 209 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 CTSBP07858 339 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 CCL4P13236 92 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 NR1D1P20393 614 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 STXBP1P61764 594 aaKnown RBP6.66□□□□□ -1.34
LIMA1-202ENST00000394943 MEF2AQ02078 507 aaPredicted RBP6.66□□□□□ -1.34
LIMA1-202ENST00000394943 CLN3Q13286 438 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 SPRED3Q2MJR0 410 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 TUBB8Q3ZCM7 444 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 FAM91A1Q658Y4 838 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 Q6ZSR9 355 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 LARP4Q71RC2 724 aaKnown RBP eCLIP6.66□□□□□ -1.34
LIMA1-202ENST00000394943 TIPARPQ7Z3E1 657 aaKnown RBP6.66□□□□□ -1.34
LIMA1-202ENST00000394943 ZFAND4Q86XD8 727 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 ARFGAP2Q8N6H7 521 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 HUS1BQ8NHY5 278 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 PSMA8Q8TAA3 256 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 NKD1Q969G9 470 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 PMEPA1Q969W9 287 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 ERP27Q96DN0 273 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 PRAP1Q96NZ9 151 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 SPRTNQ9H040 489 aaPredicted RBP6.66□□□□□ -1.34
LIMA1-202ENST00000394943 LYARQ9NX58 379 aaKnown RBP6.66□□□□□ -1.34
LIMA1-202ENST00000394943 EHD3Q9NZN3 535 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 AKAP7Q9P0M2 348 aaPredicted RBP6.66□□□□□ -1.34
LIMA1-202ENST00000394943 CPSF2Q9P2I0 782 aaKnown RBP6.66□□□□□ -1.34
LIMA1-202ENST00000394943 MMACHCQ9Y4U1 282 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 RP1P56715 2156 aa6.66□□□□□ -1.34
LIMA1-202ENST00000394943 HYKKA2RU49 373 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 URADA6NGE7 173 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 ANKRD28O15084 1053 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 CCNT2O60583 730 aaKnown RBP6.65□□□□□ -1.34
LIMA1-202ENST00000394943 SPAG7O75391 227 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 KLF7O75840 302 aaPredicted RBP6.65□□□□□ -1.34
LIMA1-202ENST00000394943 CEACAM4O75871 244 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 IGHEP01854 428 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 GUSBP08236 651 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 PIM1P11309 404 aaPredicted RBP6.65□□□□□ -1.34
LIMA1-202ENST00000394943 SAT1P21673 171 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 GRK3P35626 688 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 CCNG1P51959 295 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 RHAGQ02094 409 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 ZRSR2Q15696 482 aaKnown RBP6.65□□□□□ -1.34
LIMA1-202ENST00000394943 GPR19Q15760 415 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 HIST2H2ACQ16777 129 aaPredicted RBP6.65□□□□□ -1.34
LIMA1-202ENST00000394943 NDUFA9Q16795 377 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 SPIN4Q56A73 249 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 ARL13AQ5H913 290 aaPredicted RBP6.65□□□□□ -1.34
LIMA1-202ENST00000394943 ATG16L1Q676U5 607 aa6.65□□□□□ -1.34
LIMA1-202ENST00000394943 HIST2H2AA3Q6FI13 130 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms