RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 FBXO15Q8NCQ5 510 aaPredicted RBP12.74□□□□□ -0.37
NPHP4-203ENST00000378169 PIGXQ8TBF5 258 aa12.74□□□□□ -0.37
NPHP4-203ENST00000378169 RAB2BQ8WUD1 216 aa12.74□□□□□ -0.37
NPHP4-203ENST00000378169 OSBPL10Q9BXB5 764 aa12.74□□□□□ -0.37
NPHP4-203ENST00000378169 KAT8Q9H7Z6 458 aaKnown RBP12.74□□□□□ -0.37
NPHP4-203ENST00000378169 GALNT8Q9NY28 637 aa12.74□□□□□ -0.37
NPHP4-203ENST00000378169 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.74□□□□□ -0.37
NPHP4-203ENST00000378169 RHPN2P1A8MT19 583 aa12.74□□□□□ -0.37
NPHP4-203ENST00000378169 HIDE1A8MVS5 230 aa12.74□□□□□ -0.37
NPHP4-203ENST00000378169 ZNF99A8MXY4 864 aaPredicted RBP12.74□□□□□ -0.37
NPHP4-203ENST00000378169 NDUFA9Q16795 377 aa12.74□□□□□ -0.37
NPHP4-203ENST00000378169 EGFLAMQ63HQ2 1017 aa12.74□□□□□ -0.37
NPHP4-203ENST00000378169 FBXO46Q6PJ61 603 aaPredicted RBP12.74□□□□□ -0.37
NPHP4-203ENST00000378169 KLHL17Q6TDP4 642 aa12.74□□□□□ -0.37
NPHP4-203ENST00000378169 LARP4Q71RC2 724 aaKnown RBP eCLIP12.74□□□□□ -0.37
NPHP4-203ENST00000378169 HSD11B1LQ7Z5J1 315 aa12.74□□□□□ -0.37
NPHP4-203ENST00000378169 CCDC116Q8IYX3 515 aa12.74□□□□□ -0.37
NPHP4-203ENST00000378169 DOK4Q8TEW6 326 aa12.74□□□□□ -0.37
NPHP4-203ENST00000378169 GEMIN6Q8WXD5 167 aaKnown RBP12.74□□□□□ -0.37
NPHP4-203ENST00000378169 S100ZQ8WXG8 99 aa12.74□□□□□ -0.37
NPHP4-203ENST00000378169 PMEPA1Q969W9 287 aa12.74□□□□□ -0.37
NPHP4-203ENST00000378169 TRIM39Q9HCM9 518 aa12.74□□□□□ -0.37
NPHP4-203ENST00000378169 ATXN10Q9UBB4 475 aa12.74□□□□□ -0.37
NPHP4-203ENST00000378169 P2RX2Q9UBL9 471 aa12.74□□□□□ -0.37
NPHP4-203ENST00000378169 FEZF1A0PJY2 475 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 MID1O15344 667 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 SNX4O95219 450 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 OR5F1O95221 314 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 CH25HO95992 272 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 POLR2CP19387 275 aaPredicted RBP12.73□□□□□ -0.37
NPHP4-203ENST00000378169 HTR1EP28566 365 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 KCNC1P48547 511 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 KHKP50053 298 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 ATP12AP54707 1039 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 TOR1AIP1Q5JTV8 583 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 CXorf57Q6NSI4 855 aaKnown RBP12.73□□□□□ -0.37
NPHP4-203ENST00000378169 XKR5Q6UX68 686 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 GAREM2Q75VX8 874 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 OR8J3Q8NGG0 315 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 FAR1Q8WVX9 515 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 POLR2J2Q9GZM3 115 aaKnown RBP12.73□□□□□ -0.37
NPHP4-203ENST00000378169 TIMMDC1Q9NPL8 285 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 PRDM8Q9NQV8 689 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 RPS17P08708 135 aaKnown RBP12.73□□□□□ -0.37
NPHP4-203ENST00000378169 TIA1P31483 386 aaKnown RBP eCLIP12.73□□□□□ -0.371e-5■■■□□ 19.1
NPHP4-203ENST00000378169 ZNF542PQ5EBM4 170 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 LMNTD1Q8N9Z9 388 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 ATP6V1C2Q8NEY4 427 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 UBXN10Q96LJ8 280 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 SLITRK2Q9H156 845 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 CALML5Q9NZT1 146 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 RIMKLBQ9ULI2 386 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 HEBP2Q9Y5Z4 205 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 MCM3APO60318 1980 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.73□□□□□ -0.37
NPHP4-203ENST00000378169 SOCS2O14508 198 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 ALPPP05187 535 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 LAMP1P11279 417 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 IL12AP29459 219 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 CCR7P32248 378 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 GRIK2Q13002 908 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 RUNX3Q13761 415 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 MBTPS1Q14703 1052 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 ENPP6Q6UWR7 440 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 VTCN1Q7Z7D3 282 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 AQP11Q8NBQ7 271 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 TSTD1Q8NFU3 115 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 EGLN2Q96KS0 407 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 SLC30A3Q99726 388 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 SLC29A1Q99808 456 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 ABCG4Q9H172 646 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 TBC1D17Q9HA65 648 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 C5AR2Q9P296 337 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 CCL26Q9Y258 94 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 LAMB2P55268 1798 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 ADAMTSL1Q8N6G6 1762 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 C9P02748 559 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 H1F0P07305 194 aaKnown RBP12.73□□□□□ -0.37
NPHP4-203ENST00000378169 ALOX5P09917 674 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 CTSCP53634 463 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 CLDN8P56748 225 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 EIF4HQ15056 248 aaKnown RBP12.73□□□□□ -0.37
NPHP4-203ENST00000378169 ZBED5Q49AG3 693 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 IQCCQ4KMZ1 466 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 CLEC14AQ86T13 490 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 LSMEM2Q8N112 164 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 MAL2Q969L2 176 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 P2RY13Q9BPV8 354 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 SLC12A9Q9BXP2 914 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 SLC2A11Q9BYW1 496 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 RC3H2Q9HBD1 1191 aaKnown RBP12.73□□□□□ -0.37
NPHP4-203ENST00000378169 TAS2R9Q9NYW1 312 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 VAPAQ9P0L0 249 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 PCDHB11Q9Y5F2 797 aa12.73□□□□□ -0.37
NPHP4-203ENST00000378169 MPC1LP0DKB6 136 aa12.72□□□□□ -0.37
NPHP4-203ENST00000378169 C1orf61Q13536 156 aa12.72□□□□□ -0.37
NPHP4-203ENST00000378169 KCNC3Q14003 757 aa12.72□□□□□ -0.37
NPHP4-203ENST00000378169 LAPTM4BQ86VI4 370 aa12.72□□□□□ -0.37
NPHP4-203ENST00000378169 TMEM203Q969S6 136 aa12.72□□□□□ -0.37
NPHP4-203ENST00000378169 ZC4H2Q9NQZ6 224 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms