RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 FBXO22Q8NEZ5 403 aa15.78■□□□□ 0.12
SDC4-201ENST00000372733 OR4C15Q8NGM1 316 aa15.78■□□□□ 0.12
SDC4-201ENST00000372733 CEP44Q9C0F1 390 aa15.78■□□□□ 0.12
SDC4-201ENST00000372733 TRPM5Q9NZQ8 1165 aa15.78■□□□□ 0.12
SDC4-201ENST00000372733 VPS29Q9UBQ0 182 aa15.78■□□□□ 0.12
SDC4-201ENST00000372733 AP3D1O14617 1153 aa15.78■□□□□ 0.12
SDC4-201ENST00000372733 ZW10O43264 779 aa15.78■□□□□ 0.12
SDC4-201ENST00000372733 ETHE1O95571 254 aa15.78■□□□□ 0.12
SDC4-201ENST00000372733 APOA1P02647 267 aa15.78■□□□□ 0.12
SDC4-201ENST00000372733 C8GP07360 202 aa15.78■□□□□ 0.12
SDC4-201ENST00000372733 FKBP1BP68106 108 aa15.78■□□□□ 0.12
SDC4-201ENST00000372733 IRF3Q14653 427 aa15.78■□□□□ 0.12
SDC4-201ENST00000372733 MED22Q15528 200 aa15.78■□□□□ 0.12
SDC4-201ENST00000372733 COX20Q5RI15 118 aa15.78■□□□□ 0.12
SDC4-201ENST00000372733 NXNL2Q5VZ03 156 aa15.78■□□□□ 0.12
SDC4-201ENST00000372733 MFSD14CQ5VZR4 134 aa15.78■□□□□ 0.12
SDC4-201ENST00000372733 THOC7Q6I9Y2 204 aaKnown RBP15.78■□□□□ 0.12
SDC4-201ENST00000372733 CRTC1Q6UUV9 634 aa15.78■□□□□ 0.12
SDC4-201ENST00000372733 ZNF852Q6ZMS4 543 aa15.78■□□□□ 0.12
SDC4-201ENST00000372733 CCDC190Q86UF4 302 aa15.78■□□□□ 0.12
SDC4-201ENST00000372733 TP53INP1Q96A56 240 aa15.78■□□□□ 0.12
SDC4-201ENST00000372733 POFUT2Q9Y2G5 429 aa15.78■□□□□ 0.12
SDC4-201ENST00000372733 PRAMEF25A6NGN4 478 aa15.77■□□□□ 0.12
SDC4-201ENST00000372733 GLTPD2A6NH11 291 aa15.77■□□□□ 0.12
SDC4-201ENST00000372733 GABRR3A8MPY1 467 aa15.77■□□□□ 0.12
SDC4-201ENST00000372733 J3KTA2 159 aa15.77■□□□□ 0.12
SDC4-201ENST00000372733 RGS13O14921 159 aa15.77■□□□□ 0.12
SDC4-201ENST00000372733 IDH3BO43837 385 aa15.77■□□□□ 0.12
SDC4-201ENST00000372733 KRT8P05787 483 aa15.77■□□□□ 0.12
SDC4-201ENST00000372733 PIK3CBP42338 1070 aa15.77■□□□□ 0.12
SDC4-201ENST00000372733 DGKEP52429 567 aa15.77■□□□□ 0.12
SDC4-201ENST00000372733 OR2B6P58173 313 aa15.77■□□□□ 0.12
SDC4-201ENST00000372733 PFN3P60673 137 aa15.77■□□□□ 0.12
SDC4-201ENST00000372733 SMARCB1Q12824 385 aa15.77■□□□□ 0.12
SDC4-201ENST00000372733 DMC1Q14565 340 aa15.77■□□□□ 0.12
SDC4-201ENST00000372733 XKR6Q5GH73 641 aa15.77■□□□□ 0.12
SDC4-201ENST00000372733 LRRC73Q5JTD7 316 aa15.77■□□□□ 0.12
SDC4-201ENST00000372733 TTC23LQ6PF05 361 aa15.77■□□□□ 0.12
SDC4-201ENST00000372733 NPAS3Q8IXF0 933 aa15.77■□□□□ 0.12
SDC4-201ENST00000372733 C11orf65Q8NCR3 313 aa15.77■□□□□ 0.12
SDC4-201ENST00000372733 ARHGAP39Q9C0H5 1083 aa15.77■□□□□ 0.12
SDC4-201ENST00000372733 GABRQQ9UN88 632 aa15.77■□□□□ 0.12
SDC4-201ENST00000372733 AGAP14A8MT82 685 aa15.77■□□□□ 0.11
SDC4-201ENST00000372733 E7EQ34 232 aa15.77■□□□□ 0.11
SDC4-201ENST00000372733 H3BQ06 376 aaPredicted RBP15.77■□□□□ 0.11
SDC4-201ENST00000372733 H7C4K7 107 aa15.77■□□□□ 0.11
SDC4-201ENST00000372733 BNIP3LO60238 219 aa15.77■□□□□ 0.11
SDC4-201ENST00000372733 MTX2O75431 263 aa15.77■□□□□ 0.11
SDC4-201ENST00000372733 ETFAP13804 333 aa15.77■□□□□ 0.11
SDC4-201ENST00000372733 OR1D2P34982 312 aa15.77■□□□□ 0.11
SDC4-201ENST00000372733 HNMTP50135 292 aa15.77■□□□□ 0.11
SDC4-201ENST00000372733 SMAD3P84022 425 aaKnown RBP15.77■□□□□ 0.11
SDC4-201ENST00000372733 BCL7AQ4VC05 210 aa15.77■□□□□ 0.11
SDC4-201ENST00000372733 ATAD3CQ5T2N8 411 aa15.77■□□□□ 0.11
SDC4-201ENST00000372733 ZNF648Q5T619 568 aaPredicted RBP15.77■□□□□ 0.11
SDC4-201ENST00000372733 CPTPQ5TA50 214 aa15.77■□□□□ 0.11
SDC4-201ENST00000372733 NANOGNBQ7Z5D8 188 aa15.77■□□□□ 0.11
SDC4-201ENST00000372733 C1orf52Q8N6N3 182 aaKnown RBP15.77■□□□□ 0.11
SDC4-201ENST00000372733 GPR156Q8NFN8 814 aa15.77■□□□□ 0.11
SDC4-201ENST00000372733 C2orf15Q8WU43 125 aaKnown RBP15.77■□□□□ 0.11
SDC4-201ENST00000372733 CHAC2Q8WUX2 184 aa15.77■□□□□ 0.11
SDC4-201ENST00000372733 GTPBP3Q969Y2 492 aaKnown RBP15.77■□□□□ 0.11
SDC4-201ENST00000372733 SLC22A12Q96S37 553 aa15.77■□□□□ 0.11
SDC4-201ENST00000372733 TSEN34Q9BSV6 310 aaKnown RBP15.77■□□□□ 0.11
SDC4-201ENST00000372733 TMEM161AQ9NX61 479 aa15.77■□□□□ 0.11
SDC4-201ENST00000372733 ZNF221Q9UK13 617 aa15.77■□□□□ 0.11
SDC4-201ENST00000372733 MKLN1Q9UL63 735 aa15.77■□□□□ 0.11
SDC4-201ENST00000372733 TBC1D24Q9ULP9 559 aa15.77■□□□□ 0.11
SDC4-201ENST00000372733 RUVBL1Q9Y265 456 aaKnown RBP15.77■□□□□ 0.11
SDC4-201ENST00000372733 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP15.76■□□□□ 0.11
SDC4-201ENST00000372733 A8MV72 311 aaPredicted RBP15.76■□□□□ 0.11
SDC4-201ENST00000372733 LOC110117498-PIK3R3F6TDL0 507 aa15.76■□□□□ 0.11
SDC4-201ENST00000372733 CYP7B1O75881 506 aa15.76■□□□□ 0.11
SDC4-201ENST00000372733 CCND3P30281 292 aaPredicted RBP15.76■□□□□ 0.11
SDC4-201ENST00000372733 SOX6P35712 828 aa15.76■□□□□ 0.11
SDC4-201ENST00000372733 ETV6P41212 452 aa15.76■□□□□ 0.11
SDC4-201ENST00000372733 CRATP43155 626 aa15.76■□□□□ 0.11
SDC4-201ENST00000372733 SLC15A1P46059 708 aa15.76■□□□□ 0.11
SDC4-201ENST00000372733 SELENOWP63302 87 aa15.76■□□□□ 0.11
SDC4-201ENST00000372733 KRR1Q13601 381 aaKnown RBP15.76■□□□□ 0.11
SDC4-201ENST00000372733 LRRC26Q2I0M4 334 aa15.76■□□□□ 0.11
SDC4-201ENST00000372733 ZNF367Q7RTV3 350 aa15.76■□□□□ 0.11
SDC4-201ENST00000372733 GATAD2AQ86YP4 633 aa15.76■□□□□ 0.11
SDC4-201ENST00000372733 OR8H2Q8N162 312 aa15.76■□□□□ 0.11
SDC4-201ENST00000372733 DEPDC4Q8N2C3 294 aa15.76■□□□□ 0.11
SDC4-201ENST00000372733 HJURPQ8NCD3 748 aaPredicted RBP15.76■□□□□ 0.11
SDC4-201ENST00000372733 OR6F1Q8NGZ6 308 aa15.76■□□□□ 0.11
SDC4-201ENST00000372733 ASIC4Q96FT7 647 aa15.76■□□□□ 0.11
SDC4-201ENST00000372733 PNMA8CA0A1B0GUJ8 204 aa15.76■□□□□ 0.11
SDC4-201ENST00000372733 PDZK1P1A8MUH7 402 aa15.76■□□□□ 0.11
SDC4-201ENST00000372733 OR56A5P0C7T3 313 aa15.76■□□□□ 0.11
SDC4-201ENST00000372733 ANXA8P13928 327 aa15.76■□□□□ 0.11
SDC4-201ENST00000372733 OLR1P78380 273 aa15.76■□□□□ 0.11
SDC4-201ENST00000372733 RAE1P78406 368 aaKnown RBP15.76■□□□□ 0.11
SDC4-201ENST00000372733 CCSAPQ6IQ19 270 aaPredicted RBP15.76■□□□□ 0.11
SDC4-201ENST00000372733 ATCAYQ86WG3 371 aa15.76■□□□□ 0.11
SDC4-201ENST00000372733 HOMEZQ8IX15 550 aa15.76■□□□□ 0.11
SDC4-201ENST00000372733 CBARPQ8N350 705 aaPredicted RBP15.76■□□□□ 0.11
SDC4-201ENST00000372733 DENND6BQ8NEG7 585 aa15.76■□□□□ 0.11
SDC4-201ENST00000372733 OR4A15Q8NGL6 344 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms