RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 PTGES3LE9PB15 166 aa20.02■□□□□ 0.79
CCDC88B-203ENST00000359902 SAP18O00422 153 aaKnown RBP20.02■□□□□ 0.79
CCDC88B-203ENST00000359902 CCDC159P0C7I6 412 aa20.02■□□□□ 0.79
CCDC88B-203ENST00000359902 PLA2G16P53816 162 aa20.02■□□□□ 0.79
CCDC88B-203ENST00000359902 IL5RAQ01344 420 aa20.02■□□□□ 0.79
CCDC88B-203ENST00000359902 NFE2L1Q14494 772 aa20.02■□□□□ 0.79
CCDC88B-203ENST00000359902 ELAVL3Q14576 367 aaKnown RBP20.02■□□□□ 0.79
CCDC88B-203ENST00000359902 PAGE2BQ5JRK9 111 aa20.02■□□□□ 0.79
CCDC88B-203ENST00000359902 CRTC3Q6UUV7 619 aa20.02■□□□□ 0.79
CCDC88B-203ENST00000359902 NXPE4Q6UWF7 544 aa20.02■□□□□ 0.79
CCDC88B-203ENST00000359902 OR4K1Q8NGD4 311 aa20.02■□□□□ 0.79
CCDC88B-203ENST00000359902 ZNF566Q969W8 418 aa20.02■□□□□ 0.79
CCDC88B-203ENST00000359902 THAP11Q96EK4 314 aa20.02■□□□□ 0.79
CCDC88B-203ENST00000359902 ZNF514Q96K75 400 aaPredicted RBP20.02■□□□□ 0.79
CCDC88B-203ENST00000359902 OR51B5Q9H339 312 aa20.02■□□□□ 0.79
CCDC88B-203ENST00000359902 DEC1Q9P2X7 70 aa20.02■□□□□ 0.79
CCDC88B-203ENST00000359902 ZNF282Q9UDV7 671 aaPredicted RBP20.02■□□□□ 0.79
CCDC88B-203ENST00000359902 TMEM229AB2RXF0 380 aa20.01■□□□□ 0.79
CCDC88B-203ENST00000359902 NOL3O60936 208 aaKnown RBP20.01■□□□□ 0.79
CCDC88B-203ENST00000359902 GCM2O75603 506 aaPredicted RBP20.01■□□□□ 0.79
CCDC88B-203ENST00000359902 KLHL18O94889 574 aa20.01■□□□□ 0.79
CCDC88B-203ENST00000359902 CYP4B1P13584 511 aa20.01■□□□□ 0.79
CCDC88B-203ENST00000359902 PCGF2P35227 344 aa20.01■□□□□ 0.79
CCDC88B-203ENST00000359902 ENTPD1P49961 510 aa20.01■□□□□ 0.79
CCDC88B-203ENST00000359902 ITGA1P56199 1179 aa20.01■□□□□ 0.79
CCDC88B-203ENST00000359902 KCNJ10P78508 379 aa20.01■□□□□ 0.79
CCDC88B-203ENST00000359902 IL1RL1Q01638 556 aa20.01■□□□□ 0.79
CCDC88B-203ENST00000359902 MEF2AQ02078 507 aaPredicted RBP20.01■□□□□ 0.79
CCDC88B-203ENST00000359902 LRRC74AQ0VAA2 488 aa20.01■□□□□ 0.79
CCDC88B-203ENST00000359902 C12orf76Q8N812 135 aaPredicted RBP20.01■□□□□ 0.79
CCDC88B-203ENST00000359902 KIAA1958Q8N8K9 716 aa20.01■□□□□ 0.79
CCDC88B-203ENST00000359902 OR2L2Q8NH16 312 aa20.01■□□□□ 0.79
CCDC88B-203ENST00000359902 GOT1L1Q8NHS2 421 aaPredicted RBP20.01■□□□□ 0.79
CCDC88B-203ENST00000359902 WDR48Q8TAF3 677 aa20.01■□□□□ 0.79
CCDC88B-203ENST00000359902 SLC5A11Q8WWX8 675 aa20.01■□□□□ 0.79
CCDC88B-203ENST00000359902 NODALQ96S42 347 aa20.01■□□□□ 0.79
CCDC88B-203ENST00000359902 ZDHHC5Q9C0B5 715 aa20.01■□□□□ 0.79
CCDC88B-203ENST00000359902 GPATCH2Q9NW75 528 aa20.01■□□□□ 0.79
CCDC88B-203ENST00000359902 FAF1Q9UNN5 650 aaPredicted RBP20.01■□□□□ 0.79
CCDC88B-203ENST00000359902 GPR34Q9UPC5 381 aa20.01■□□□□ 0.79
CCDC88B-203ENST00000359902 FOXD2O60548 495 aaPredicted RBP20.01■□□□□ 0.79
CCDC88B-203ENST00000359902 CCNA2P20248 432 aa20.01■□□□□ 0.79
CCDC88B-203ENST00000359902 MVDP53602 400 aa20.01■□□□□ 0.79
CCDC88B-203ENST00000359902 HBA1P69905 142 aa20.01■□□□□ 0.79
CCDC88B-203ENST00000359902 MC1RQ01726 317 aa20.01■□□□□ 0.79
CCDC88B-203ENST00000359902 NFATC3Q12968 1075 aa20.01■□□□□ 0.79
CCDC88B-203ENST00000359902 KEAP1Q14145 624 aa20.01■□□□□ 0.79
CCDC88B-203ENST00000359902 HIST2H2ACQ16777 129 aaPredicted RBP20.01■□□□□ 0.79
CCDC88B-203ENST00000359902 HIST2H2AA3Q6FI13 130 aa20.01■□□□□ 0.79
CCDC88B-203ENST00000359902 SETD9Q8NE22 299 aa20.01■□□□□ 0.79
CCDC88B-203ENST00000359902 SMG7Q92540 1137 aaKnown RBP20.01■□□□□ 0.79
CCDC88B-203ENST00000359902 EZH1Q92800 747 aaPredicted RBP20.01■□□□□ 0.79
CCDC88B-203ENST00000359902 DPEP2Q9H4A9 486 aa20.01■□□□□ 0.79
CCDC88B-203ENST00000359902 HEPACAM2A8MVW5 462 aa20■□□□□ 0.79
CCDC88B-203ENST00000359902 M0QX08 132 aa20■□□□□ 0.79
CCDC88B-203ENST00000359902 XPNPEP2O43895 674 aa20■□□□□ 0.79
CCDC88B-203ENST00000359902 JRKO75564 520 aa20■□□□□ 0.79
CCDC88B-203ENST00000359902 POU2F2P09086 479 aa20■□□□□ 0.79
CCDC88B-203ENST00000359902 AQP1P29972 269 aa20■□□□□ 0.79
CCDC88B-203ENST00000359902 ZNF234Q14588 700 aa20■□□□□ 0.79
CCDC88B-203ENST00000359902 TMEM52BQ4KMG9 183 aa20■□□□□ 0.79
CCDC88B-203ENST00000359902 FAM78AQ5JUQ0 283 aa20■□□□□ 0.79
CCDC88B-203ENST00000359902 IER5LQ5T953 404 aa20■□□□□ 0.79
CCDC88B-203ENST00000359902 ZNF852Q6ZMS4 543 aa20■□□□□ 0.79
CCDC88B-203ENST00000359902 FAM83HQ6ZRV2 1179 aaPredicted RBP20■□□□□ 0.79
CCDC88B-203ENST00000359902 C11orf96Q7Z7L8 435 aa20■□□□□ 0.79
CCDC88B-203ENST00000359902 MUL1Q969V5 352 aa20■□□□□ 0.79
CCDC88B-203ENST00000359902 CSF3RQ99062 836 aa20■□□□□ 0.79
CCDC88B-203ENST00000359902 REEP1Q9H902 201 aa20■□□□□ 0.79
CCDC88B-203ENST00000359902 PCYT1BQ9Y5K3 369 aaPredicted RBP20■□□□□ 0.79
CCDC88B-203ENST00000359902 C5orf67F2Z3F1 127 aa19.99■□□□□ 0.79
CCDC88B-203ENST00000359902 SUV39H1O43463 412 aa19.99■□□□□ 0.79
CCDC88B-203ENST00000359902 DPM1O60762 260 aa19.99■□□□□ 0.79
CCDC88B-203ENST00000359902 FURINP09958 794 aa19.99■□□□□ 0.79
CCDC88B-203ENST00000359902 PCMT1P22061 227 aa19.99■□□□□ 0.79
CCDC88B-203ENST00000359902 COX20Q5RI15 118 aa19.99■□□□□ 0.79
CCDC88B-203ENST00000359902 C11orf65Q8NCR3 313 aa19.99■□□□□ 0.79
CCDC88B-203ENST00000359902 ZNF740Q8NDX6 193 aa19.99■□□□□ 0.79
CCDC88B-203ENST00000359902 ST13P5Q8NFI4 369 aaPredicted RBP19.99■□□□□ 0.79
CCDC88B-203ENST00000359902 C16orf78Q8WTQ4 265 aa19.99■□□□□ 0.79
CCDC88B-203ENST00000359902 RAB2BQ8WUD1 216 aa19.99■□□□□ 0.79
CCDC88B-203ENST00000359902 TMEM245Q9H330 911 aa19.99■□□□□ 0.79
CCDC88B-203ENST00000359902 PLGRKTQ9HBL7 147 aa19.99■□□□□ 0.79
CCDC88B-203ENST00000359902 CCDC177Q9NQR7 707 aaPredicted RBP19.99■□□□□ 0.79
CCDC88B-203ENST00000359902 ADPRHL2Q9NX46 363 aa19.99■□□□□ 0.79
CCDC88B-203ENST00000359902 THUMPD1Q9NXG2 353 aaKnown RBP19.99■□□□□ 0.79
CCDC88B-203ENST00000359902 RWDD3Q9Y3V2 267 aa19.99■□□□□ 0.79
CCDC88B-203ENST00000359902 SNX5Q9Y5X3 404 aa19.99■□□□□ 0.79
CCDC88B-203ENST00000359902 NUP210Q8TEM1 1887 aaPredicted RBP19.99■□□□□ 0.79
CCDC88B-203ENST00000359902 NFATC1O95644 943 aa19.99■□□□□ 0.79
CCDC88B-203ENST00000359902 ANGPTL1O95841 491 aa19.99■□□□□ 0.79
CCDC88B-203ENST00000359902 ZNF182P17025 639 aaPredicted RBP19.99■□□□□ 0.79
CCDC88B-203ENST00000359902 PDE7AQ13946 482 aa19.99■□□□□ 0.79
CCDC88B-203ENST00000359902 MPEG1Q2M385 716 aa19.99■□□□□ 0.79
CCDC88B-203ENST00000359902 TTC29Q8NA56 475 aaPredicted RBP19.99■□□□□ 0.79
CCDC88B-203ENST00000359902 B4GALNT2Q8NHY0 566 aa19.99■□□□□ 0.79
CCDC88B-203ENST00000359902 TBC1D15Q8TC07 691 aa19.99■□□□□ 0.79
CCDC88B-203ENST00000359902 TANKQ92844 425 aa19.99■□□□□ 0.79
CCDC88B-203ENST00000359902 PPP1R16AQ96I34 528 aa19.99■□□□□ 0.79
CCDC88B-203ENST00000359902 DOHHQ9BU89 302 aa19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms