RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 HUS1BQ8NHY5 278 aa21.09■□□□□ 0.97
SHMT1-203ENST00000354098 WDR20Q8TBZ3 569 aa21.09■□□□□ 0.97
SHMT1-203ENST00000354098 ZNF473Q8WTR7 871 aaKnown RBP21.09■□□□□ 0.97
SHMT1-203ENST00000354098 FGF11Q92914 225 aa21.09■□□□□ 0.97
SHMT1-203ENST00000354098 KCNA7Q96RP8 456 aa21.09■□□□□ 0.97
SHMT1-203ENST00000354098 MTERF1Q99551 399 aaKnown RBP21.09■□□□□ 0.97
SHMT1-203ENST00000354098 NLNQ9BYT8 704 aa21.09■□□□□ 0.97
SHMT1-203ENST00000354098 TRPS1Q9UHF7 1281 aa21.09■□□□□ 0.97
SHMT1-203ENST00000354098 SRPK3Q9UPE1 567 aa21.09■□□□□ 0.97
SHMT1-203ENST00000354098 NPHS1O60500 1241 aa21.09■□□□□ 0.97
SHMT1-203ENST00000354098 ESRRBO95718 433 aa21.09■□□□□ 0.97
SHMT1-203ENST00000354098 CAPN1P07384 714 aa21.09■□□□□ 0.97
SHMT1-203ENST00000354098 BGNP21810 368 aa21.09■□□□□ 0.97
SHMT1-203ENST00000354098 CD82P27701 267 aa21.09■□□□□ 0.97
SHMT1-203ENST00000354098 ARSFP54793 590 aa21.09■□□□□ 0.97
SHMT1-203ENST00000354098 FOXA1P55317 472 aa21.09■□□□□ 0.97
SHMT1-203ENST00000354098 PKNOX1P55347 436 aa21.09■□□□□ 0.97
SHMT1-203ENST00000354098 TCHHL1Q5QJ38 904 aaPredicted RBP21.09■□□□□ 0.97
SHMT1-203ENST00000354098 LCN10Q6JVE6 187 aa21.09■□□□□ 0.97
SHMT1-203ENST00000354098 FAM199XQ6PEV8 388 aaPredicted RBP21.09■□□□□ 0.97
SHMT1-203ENST00000354098 C6orf15Q6UXA7 325 aaPredicted RBP21.09■□□□□ 0.97
SHMT1-203ENST00000354098 UNQ6494/PRO21346Q6UXR6 183 aa21.09■□□□□ 0.97
SHMT1-203ENST00000354098 ZCCHC10Q8TBK6 192 aa21.09■□□□□ 0.97
SHMT1-203ENST00000354098 SREK1Q8WXA9 508 aaKnown RBP21.09■□□□□ 0.97
SHMT1-203ENST00000354098 SLC6A16Q9GZN6 736 aa21.09■□□□□ 0.97
SHMT1-203ENST00000354098 TXLNGQ9NUQ3 528 aa21.09■□□□□ 0.97
SHMT1-203ENST00000354098 DKK4Q9UBT3 224 aa21.09■□□□□ 0.97
SHMT1-203ENST00000354098 NDOR1Q9UHB4 597 aa21.09■□□□□ 0.97
SHMT1-203ENST00000354098 CELSR3Q9NYQ7 3312 aa21.08■□□□□ 0.97
SHMT1-203ENST00000354098 IQCJ-SCHIP1C9J366 451 aaPredicted RBP21.08■□□□□ 0.96
SHMT1-203ENST00000354098 MEN1O00255 615 aa21.08■□□□□ 0.96
SHMT1-203ENST00000354098 SH3BGRLO75368 114 aa21.08■□□□□ 0.96
SHMT1-203ENST00000354098 CLEC3AO75596 197 aa21.08■□□□□ 0.96
SHMT1-203ENST00000354098 SERPINA6P08185 405 aa21.08■□□□□ 0.96
SHMT1-203ENST00000354098 HBQ1P09105 142 aa21.08■□□□□ 0.96
SHMT1-203ENST00000354098 HNRNPH1P31943 449 aaKnown RBP21.08■□□□□ 0.96
SHMT1-203ENST00000354098 ATP1A2P50993 1020 aa21.08■□□□□ 0.96
SHMT1-203ENST00000354098 EMP3P54852 163 aa21.08■□□□□ 0.96
SHMT1-203ENST00000354098 RGS1Q08116 209 aa21.08■□□□□ 0.96
SHMT1-203ENST00000354098 ARL13AQ5H913 290 aaPredicted RBP21.08■□□□□ 0.96
SHMT1-203ENST00000354098 MANEAQ5SRI9 462 aa21.08■□□□□ 0.96
SHMT1-203ENST00000354098 YOD1Q5VVQ6 348 aaPredicted RBP21.08■□□□□ 0.96
SHMT1-203ENST00000354098 ZNF385CQ66K41 422 aaPredicted RBP21.08■□□□□ 0.96
SHMT1-203ENST00000354098 TTC19Q6DKK2 380 aaPredicted RBP21.08■□□□□ 0.96
SHMT1-203ENST00000354098 PRSS41Q7RTY9 318 aa21.08■□□□□ 0.96
SHMT1-203ENST00000354098 DTX1Q86Y01 620 aa21.08■□□□□ 0.96
SHMT1-203ENST00000354098 DSELQ8IZU8 1212 aa21.08■□□□□ 0.96
SHMT1-203ENST00000354098 PPP1R14CQ8TAE6 165 aa21.08■□□□□ 0.96
SHMT1-203ENST00000354098 GBP5Q96PP8 586 aa21.08■□□□□ 0.96
SHMT1-203ENST00000354098 ZNF395Q9H8N7 513 aaPredicted RBP21.08■□□□□ 0.96
SHMT1-203ENST00000354098 FARSBQ9NSD9 589 aaKnown RBP21.08■□□□□ 0.96
SHMT1-203ENST00000354098 STK38LQ9Y2H1 464 aa21.08■□□□□ 0.96
SHMT1-203ENST00000354098 TIMM22Q9Y584 194 aa21.08■□□□□ 0.96
SHMT1-203ENST00000354098 LRIT2A6NDA9 550 aa21.07■□□□□ 0.96
SHMT1-203ENST00000354098 C4orf51C9J302 202 aa21.07■□□□□ 0.96
SHMT1-203ENST00000354098 DSCR3O14972 297 aa21.07■□□□□ 0.96
SHMT1-203ENST00000354098 RAD1O60671 282 aa21.07■□□□□ 0.96
SHMT1-203ENST00000354098 B3GALT4O96024 378 aa21.07■□□□□ 0.96
SHMT1-203ENST00000354098 TGFB1P01137 390 aa21.07■□□□□ 0.96
SHMT1-203ENST00000354098 ITGAXP20702 1163 aa21.07■□□□□ 0.96
SHMT1-203ENST00000354098 GSTM2P28161 218 aa21.07■□□□□ 0.96
SHMT1-203ENST00000354098 PPP2R2AP63151 447 aa21.07■□□□□ 0.96
SHMT1-203ENST00000354098 RCN2Q14257 317 aa21.07■□□□□ 0.96
SHMT1-203ENST00000354098 MUM1Q2TAK8 710 aa21.07■□□□□ 0.96
SHMT1-203ENST00000354098 SGO1Q5FBB7 561 aa21.07■□□□□ 0.96
SHMT1-203ENST00000354098 TOR1AIP1Q5JTV8 583 aa21.07■□□□□ 0.96
SHMT1-203ENST00000354098 GARNL3Q5VVW2 1013 aa21.07■□□□□ 0.96
SHMT1-203ENST00000354098 FRG2Q64ET8 278 aa21.07■□□□□ 0.96
SHMT1-203ENST00000354098 NLGN4XQ8N0W4 816 aa21.07■□□□□ 0.96
SHMT1-203ENST00000354098 NLGN4YQ8NFZ3 816 aaPredicted RBP21.07■□□□□ 0.96
SHMT1-203ENST00000354098 METTL6Q8TCB7 284 aa21.07■□□□□ 0.96
SHMT1-203ENST00000354098 ZDHHC19Q8WVZ1 309 aaPredicted RBP21.07■□□□□ 0.96
SHMT1-203ENST00000354098 NKD1Q969G9 470 aa21.07■□□□□ 0.96
SHMT1-203ENST00000354098 REPS1Q96D71 796 aa21.07■□□□□ 0.96
SHMT1-203ENST00000354098 NAF1Q96HR8 494 aaKnown RBP21.07■□□□□ 0.96
SHMT1-203ENST00000354098 SEC16BQ96JE7 1060 aa21.07■□□□□ 0.96
SHMT1-203ENST00000354098 LRFN5Q96NI6 719 aa21.07■□□□□ 0.96
SHMT1-203ENST00000354098 FRG2BQ96QU4 278 aa21.07■□□□□ 0.96
SHMT1-203ENST00000354098 TRMOQ9BU70 441 aa21.07■□□□□ 0.96
SHMT1-203ENST00000354098 PRM3Q9NNZ6 103 aa21.07■□□□□ 0.96
SHMT1-203ENST00000354098 TSC22D4Q9Y3Q8 395 aa21.07■□□□□ 0.96
SHMT1-203ENST00000354098 A0A1B0GX78 115 aa21.06■□□□□ 0.96
SHMT1-203ENST00000354098 MAGEB17A8MXT2 336 aa21.06■□□□□ 0.96
SHMT1-203ENST00000354098 FOXS1O43638 330 aa21.06■□□□□ 0.96
SHMT1-203ENST00000354098 NEFHP12036 1026 aa21.06■□□□□ 0.96
SHMT1-203ENST00000354098 OR1D4P47884 311 aa21.06■□□□□ 0.96
SHMT1-203ENST00000354098 PCBP4P57723 403 aaKnown RBP21.06■□□□□ 0.96
SHMT1-203ENST00000354098 CUZD1Q86UP6 607 aa21.06■□□□□ 0.96
SHMT1-203ENST00000354098 MAGEB10Q96LZ2 347 aaPredicted RBP21.06■□□□□ 0.96
SHMT1-203ENST00000354098 F2RL3Q96RI0 385 aa21.06■□□□□ 0.96
SHMT1-203ENST00000354098 LHX9Q9NQ69 397 aa21.06■□□□□ 0.96
SHMT1-203ENST00000354098 MAU2Q9Y6X3 613 aa21.06■□□□□ 0.96
SHMT1-203ENST00000354098 A0A0A6YYC8 382 aaPredicted RBP21.05■□□□□ 0.96
SHMT1-203ENST00000354098 H3BQF6 201 aa21.05■□□□□ 0.96
SHMT1-203ENST00000354098 I3L1I5 382 aaPredicted RBP21.05■□□□□ 0.96
SHMT1-203ENST00000354098 ITM2AO43736 263 aa21.05■□□□□ 0.96
SHMT1-203ENST00000354098 LYPLA1O75608 230 aaPredicted RBP21.05■□□□□ 0.96
SHMT1-203ENST00000354098 SERPINE1P05121 402 aa21.05■□□□□ 0.96
SHMT1-203ENST00000354098 ZNF888P0CJ79 500 aaPredicted RBP21.05■□□□□ 0.96
SHMT1-203ENST00000354098 LIPCP11150 499 aa21.05■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms