RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 SENP2Q9HC62 589 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 AGO4Q9HCK5 861 aaKnown RBP12.25□□□□□ -0.45
COL6A3-203ENST00000353578 WASF3Q9UPY6 502 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 TCAF1Q9Y4C2 921 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 LEPRP48357 1165 aaKnown RBP12.25□□□□□ -0.45
COL6A3-203ENST00000353578 HERV-K104P61576 105 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 RTL6Q6ICC9 239 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 BLOC1S3Q6QNY0 202 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 CMC1Q7Z7K0 106 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 CLIP4Q8N3C7 705 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 FAM136AQ96C01 138 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 KLHL15Q96M94 604 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 PRRT1Q99946 306 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 TNKS2Q9H2K2 1166 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 EBF1Q9UH73 591 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 CLDN24A6NM45 220 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 GRK6P43250 576 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 UBE2UQ5VVX9 321 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 IGFN1Q86VF2 1251 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 MRPL41Q8IXM3 137 aaKnown RBP12.25□□□□□ -0.45
COL6A3-203ENST00000353578 SH3YL1Q96HL8 342 aaPredicted RBP12.25□□□□□ -0.45
COL6A3-203ENST00000353578 MROQ9BYG7 248 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.25□□□□□ -0.45
COL6A3-203ENST00000353578 BCS1LQ9Y276 419 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 ACOT7O00154 380 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 PCDH17O14917 1159 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 CAPN5O15484 640 aaPredicted RBP12.25□□□□□ -0.45
COL6A3-203ENST00000353578 DDX6P26196 483 aaKnown RBP eCLIP12.25□□□□□ -0.45
COL6A3-203ENST00000353578 KANSL1Q7Z3B3 1105 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 LYRM2Q9NU23 88 aaPredicted RBP12.25□□□□□ -0.45
COL6A3-203ENST00000353578 ABI2Q9NYB9 513 aaPredicted RBP12.25□□□□□ -0.45
COL6A3-203ENST00000353578 FBXL4Q9UKA2 621 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 CASC3O15234 703 aaKnown RBP12.25□□□□□ -0.45
COL6A3-203ENST00000353578 GPR19Q15760 415 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 SUMF2Q8NBJ7 301 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 OR2AP1Q8NGE2 309 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 CD180Q99467 661 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 COPS8Q99627 209 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 ADAM18Q9Y3Q7 739 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 ANXA4P09525 319 aaPredicted RBP12.25□□□□□ -0.45
COL6A3-203ENST00000353578 SEMA5AQ13591 1074 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 AWAT2Q6E213 333 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 CADM2Q8N3J6 435 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 MARCH10Q8NA82 808 aaPredicted RBP12.25□□□□□ -0.45
COL6A3-203ENST00000353578 POPDC3Q9HBV1 291 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 SDC3O75056 442 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 RETP07949 1114 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 CPSF6Q16630 551 aaKnown RBP eCLIP12.24□□□□□ -0.45
COL6A3-203ENST00000353578 DUOXA1Q1HG43 343 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 OR6J1Q8NGC5 347 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 UGT2A1Q9Y4X1 527 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 C22orf31O95567 290 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 ATXN8OSP0DMR3 200 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 CRYZQ08257 329 aaKnown RBP12.24□□□□□ -0.45
COL6A3-203ENST00000353578 LAMTOR4Q0VGL1 99 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 DESI1Q6ICB0 168 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 TXNRD3Q86VQ6 643 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 CYB5R1Q9UHQ9 305 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 TEX13DA0A0J9YY54 714 aaPredicted RBP12.24□□□□□ -0.45
COL6A3-203ENST00000353578 C13orf42A0A1B0GVH6 325 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 FAM159BA6NKW6 160 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 DDOSTP39656 456 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 SLC1A3P43003 542 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 PTPN9P43378 593 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 RPS14P62263 151 aaKnown RBP12.24□□□□□ -0.45
COL6A3-203ENST00000353578 ARFRP1Q13795 201 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 ZBTB2Q8N680 514 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 BIRC7Q96CA5 298 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 DUSP26Q9BV47 211 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 B3GNT5Q9BYG0 378 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 CACNG2Q9Y698 323 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 A0A1W2PPL8 197 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 WASH4PA8MWX3 477 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 ZSCAN5DPP0CG00 497 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 OPRL1P41146 370 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 RNASE12Q5GAN4 147 aaKnown RBP12.24□□□□□ -0.45
COL6A3-203ENST00000353578 SP8Q8IXZ3 490 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 LIX1Q8N485 282 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 FIBCD1Q8N539 461 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 NPLQ9BXD5 320 aaPredicted RBP12.24□□□□□ -0.45
COL6A3-203ENST00000353578 TKTL2Q9H0I9 626 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 ASF1BQ9NVP2 202 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 NPC1O15118 1278 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 CBSLP0DN79 551 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 CBSP35520 551 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 BAG6P46379 1132 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 DOK7Q18PE1 504 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 GTF2H5Q6ZYL4 71 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 NUP54Q7Z3B4 507 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 SLC15A3Q8IY34 581 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 AARSD1Q9BTE6 412 aaKnown RBP12.24□□□□□ -0.45
COL6A3-203ENST00000353578 MEAF6Q9HAF1 191 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 ASF1AQ9Y294 204 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 CNTNAP4Q9C0A0 1308 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 ITPKAP23677 461 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 RFC2P35250 354 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 CAMK2DQ13557 499 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 HSDL1Q3SXM5 330 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 ZNF527Q8NB42 609 aa12.24□□□□□ -0.45
COL6A3-203ENST00000353578 MYOCQ99972 504 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms