RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 HYAL2Q12891 473 aa8.8□□□□□ -1
USP4-202ENST00000351842 KIR2DS3Q14952 304 aa8.8□□□□□ -1
USP4-202ENST00000351842 WASHC2DQ5SRD0 308 aa8.8□□□□□ -1
USP4-202ENST00000351842 FAAH2Q6GMR7 532 aa8.8□□□□□ -1
USP4-202ENST00000351842 ACAD11Q709F0 780 aa8.8□□□□□ -1
USP4-202ENST00000351842 AMER2Q8N7J2 671 aa8.8□□□□□ -1
USP4-202ENST00000351842 C19orf47Q8N9M1 422 aaKnown RBP8.8□□□□□ -1
USP4-202ENST00000351842 WDR48Q8TAF3 677 aa8.8□□□□□ -1
USP4-202ENST00000351842 PMEPA1Q969W9 287 aa8.8□□□□□ -1
USP4-202ENST00000351842 ERP27Q96DN0 273 aa8.8□□□□□ -1
USP4-202ENST00000351842 PTCD3Q96EY7 689 aaKnown RBP8.8□□□□□ -1
USP4-202ENST00000351842 NMUR2Q9GZQ4 415 aa8.8□□□□□ -1
USP4-202ENST00000351842 REXO4Q9GZR2 422 aaKnown RBP8.8□□□□□ -1
USP4-202ENST00000351842 OCIAD1Q9NX40 245 aa8.8□□□□□ -1
USP4-202ENST00000351842 SPATA7Q9P0W8 599 aa8.8□□□□□ -1
USP4-202ENST00000351842 PISDQ9UG56 409 aa8.8□□□□□ -1
USP4-202ENST00000351842 ATMQ13315 3056 aa8.8□□□□□ -1
USP4-202ENST00000351842 A0A0A6YYC8 382 aaPredicted RBP8.8□□□□□ -1
USP4-202ENST00000351842 CCT8L1PA6NM43 557 aa8.8□□□□□ -1
USP4-202ENST00000351842 I3L1I5 382 aaPredicted RBP8.8□□□□□ -1
USP4-202ENST00000351842 MATN2O00339 956 aa8.8□□□□□ -1
USP4-202ENST00000351842 DNAJB6O75190 326 aa8.8□□□□□ -1
USP4-202ENST00000351842 OR2B3O76000 313 aa8.8□□□□□ -1
USP4-202ENST00000351842 JUPP14923 745 aa8.8□□□□□ -1
USP4-202ENST00000351842 SCTRP47872 440 aa8.8□□□□□ -1
USP4-202ENST00000351842 CASP9P55211 416 aa8.8□□□□□ -1
USP4-202ENST00000351842 CDKL1Q00532 357 aa8.8□□□□□ -1
USP4-202ENST00000351842 RIPK1Q13546 671 aa8.8□□□□□ -1
USP4-202ENST00000351842 C16orf72Q14CZ0 275 aa8.8□□□□□ -1
USP4-202ENST00000351842 TOR1AIP1Q5JTV8 583 aa8.8□□□□□ -1
USP4-202ENST00000351842 FCRL6Q6DN72 434 aa8.8□□□□□ -1
USP4-202ENST00000351842 CCDC121Q6ZUS5 278 aa8.8□□□□□ -1
USP4-202ENST00000351842 ANKRD46Q86W74 232 aa8.8□□□□□ -1
USP4-202ENST00000351842 CSNK1A1LQ8N752 337 aa8.8□□□□□ -1
USP4-202ENST00000351842 NAT6Q93015 286 aa8.8□□□□□ -1
USP4-202ENST00000351842 NAF1Q96HR8 494 aaKnown RBP8.8□□□□□ -1
USP4-202ENST00000351842 MAGED4Q96JG8 741 aa8.8□□□□□ -1
USP4-202ENST00000351842 C7orf26Q96N11 449 aa8.8□□□□□ -1
USP4-202ENST00000351842 FAM210AQ96ND0 272 aa8.8□□□□□ -1
USP4-202ENST00000351842 PDE7BQ9NP56 450 aa8.8□□□□□ -1
USP4-202ENST00000351842 FGF21Q9NSA1 209 aa8.8□□□□□ -1
USP4-202ENST00000351842 HCN3Q9P1Z3 774 aa8.8□□□□□ -1
USP4-202ENST00000351842 POMT2Q9UKY4 750 aa8.8□□□□□ -1
USP4-202ENST00000351842 PCDHGA11Q9Y5H2 935 aa8.8□□□□□ -1
USP4-202ENST00000351842 CSNK1G3Q9Y6M4 447 aa8.8□□□□□ -1
USP4-202ENST00000351842 CCDC88CQ9P219 2028 aa8.8□□□□□ -1
USP4-202ENST00000351842 SGK494L7N484 410 aa8.8□□□□□ -1
USP4-202ENST00000351842 PCDHGA12O60330 932 aa8.8□□□□□ -1
USP4-202ENST00000351842 DFNA5O60443 496 aa8.8□□□□□ -1
USP4-202ENST00000351842 SNX3O60493 162 aa8.8□□□□□ -1
USP4-202ENST00000351842 NME6O75414 186 aaPredicted RBP8.8□□□□□ -1
USP4-202ENST00000351842 JRKO75564 520 aa8.8□□□□□ -1
USP4-202ENST00000351842 ENO1P06733 434 aaKnown RBP8.8□□□□□ -1
USP4-202ENST00000351842 ABCB1P08183 1280 aaPredicted RBP8.8□□□□□ -1
USP4-202ENST00000351842 TACR1P25103 407 aa8.8□□□□□ -1
USP4-202ENST00000351842 ST13P50502 369 aaKnown RBP8.8□□□□□ -1
USP4-202ENST00000351842 ARHGAP19Q14CB8 494 aa8.8□□□□□ -1
USP4-202ENST00000351842 IL23RQ5VWK5 629 aa8.8□□□□□ -1
USP4-202ENST00000351842 FBXO42Q6P3S6 717 aa8.8□□□□□ -1
USP4-202ENST00000351842 LCTLQ6UWM7 567 aa8.8□□□□□ -1
USP4-202ENST00000351842 RASGRP3Q8IV61 690 aa8.8□□□□□ -1
USP4-202ENST00000351842 OR4N5Q8IXE1 308 aa8.8□□□□□ -1
USP4-202ENST00000351842 GPR135Q8IZ08 494 aa8.8□□□□□ -1
USP4-202ENST00000351842 KRTCAP2Q8N6L1 136 aa8.8□□□□□ -1
USP4-202ENST00000351842 ANKS4BQ8N8V4 417 aa8.8□□□□□ -1
USP4-202ENST00000351842 CCDC197Q8NCU1 140 aa8.8□□□□□ -1
USP4-202ENST00000351842 COL26A1Q96A83 441 aa8.8□□□□□ -1
USP4-202ENST00000351842 CLIP3Q96DZ5 547 aa8.8□□□□□ -1
USP4-202ENST00000351842 MAGEB10Q96LZ2 347 aaPredicted RBP8.8□□□□□ -1
USP4-202ENST00000351842 ZFYVE21Q9BQ24 234 aa8.8□□□□□ -1
USP4-202ENST00000351842 TRIM8Q9BZR9 551 aa8.8□□□□□ -1
USP4-202ENST00000351842 PFDN4Q9NQP4 134 aa8.8□□□□□ -1
USP4-202ENST00000351842 PACSIN3Q9UKS6 424 aa8.8□□□□□ -1
USP4-202ENST00000351842 DLGAP4Q9Y2H0 992 aa8.8□□□□□ -1
USP4-202ENST00000351842 ATRXP46100 2492 aa8.8□□□□□ -1
USP4-202ENST00000351842 EFCAB7A8K855 629 aa8.79□□□□□ -1
USP4-202ENST00000351842 SLC35G6P0C7Q6 338 aa8.79□□□□□ -1
USP4-202ENST00000351842 ZNF888P0CJ79 500 aaPredicted RBP8.79□□□□□ -1
USP4-202ENST00000351842 C8orf89P0DMQ9 161 aa8.79□□□□□ -1
USP4-202ENST00000351842 TGM1P22735 817 aa8.79□□□□□ -1
USP4-202ENST00000351842 CCND1P24385 295 aa8.79□□□□□ -1
USP4-202ENST00000351842 CERS1P27544 350 aa8.79□□□□□ -1
USP4-202ENST00000351842 HSD17B2P37059 387 aa8.79□□□□□ -1
USP4-202ENST00000351842 PKNOX1P55347 436 aa8.79□□□□□ -1
USP4-202ENST00000351842 MC1RQ01726 317 aa8.79□□□□□ -1
USP4-202ENST00000351842 TUBB3Q13509 450 aa8.79□□□□□ -1
USP4-202ENST00000351842 PGS1Q32NB8 556 aa8.79□□□□□ -1
USP4-202ENST00000351842 INAVAQ3KP66 663 aa8.79□□□□□ -1
USP4-202ENST00000351842 MINDY4Q4G0A6 757 aa8.79□□□□□ -1
USP4-202ENST00000351842 OGFOD3Q6PK18 319 aa8.79□□□□□ -1
USP4-202ENST00000351842 KANSL1Q7Z3B3 1105 aa8.79□□□□□ -1
USP4-202ENST00000351842 MCATQ8IVS2 390 aaKnown RBP8.79□□□□□ -1
USP4-202ENST00000351842 OR9A4Q8NGU2 314 aa8.79□□□□□ -1
USP4-202ENST00000351842 ZDHHC19Q8WVZ1 309 aaPredicted RBP8.79□□□□□ -1
USP4-202ENST00000351842 FAR2Q96K12 515 aa8.79□□□□□ -1
USP4-202ENST00000351842 TRMOQ9BU70 441 aa8.79□□□□□ -1
USP4-202ENST00000351842 EFCAB11Q9BUY7 163 aa8.79□□□□□ -1
USP4-202ENST00000351842 COPS7BQ9H9Q2 264 aaPredicted RBP8.79□□□□□ -1
USP4-202ENST00000351842 LRTM1Q9HBL6 345 aa8.79□□□□□ -1
USP4-202ENST00000351842 CDV3Q9UKY7 258 aaKnown RBP8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms