RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 ASPGQ86U10 573 aa13.89□□□□□ -0.19
CCDC88B-201ENST00000301897 RPS19BP1Q86WX3 136 aaKnown RBP13.89□□□□□ -0.19
CCDC88B-201ENST00000301897 TMEM139Q8IV31 216 aa13.89□□□□□ -0.19
CCDC88B-201ENST00000301897 SLC13A3Q8WWT9 602 aa13.89□□□□□ -0.19
CCDC88B-201ENST00000301897 ASB5Q8WWX0 329 aa13.89□□□□□ -0.19
CCDC88B-201ENST00000301897 TM4SF19Q96DZ7 209 aa13.89□□□□□ -0.19
CCDC88B-201ENST00000301897 NPAS2Q99743 824 aa13.89□□□□□ -0.19
CCDC88B-201ENST00000301897 DHRS7Q9Y394 339 aa13.89□□□□□ -0.19
CCDC88B-201ENST00000301897 CAPN6Q9Y6Q1 641 aa13.89□□□□□ -0.19
CCDC88B-201ENST00000301897 MAGEB16A2A368 324 aa13.88□□□□□ -0.19
CCDC88B-201ENST00000301897 RDH16O75452 317 aa13.88□□□□□ -0.19
CCDC88B-201ENST00000301897 CYB561P49447 251 aa13.88□□□□□ -0.19
CCDC88B-201ENST00000301897 TBPL1P62380 186 aa13.88□□□□□ -0.19
CCDC88B-201ENST00000301897 THOC5Q13769 683 aaKnown RBP13.88□□□□□ -0.19
CCDC88B-201ENST00000301897 ZNF470Q6ECI4 717 aa13.88□□□□□ -0.19
CCDC88B-201ENST00000301897 TMEM211Q6ICI0 200 aa13.88□□□□□ -0.19
CCDC88B-201ENST00000301897 CAPN13Q6MZZ7 669 aaPredicted RBP13.88□□□□□ -0.19
CCDC88B-201ENST00000301897 CASC4Q6P4E1 433 aa13.88□□□□□ -0.19
CCDC88B-201ENST00000301897 UBE2R2Q712K3 238 aaPredicted RBP13.88□□□□□ -0.19
CCDC88B-201ENST00000301897 LMNTD2Q8IXW0 634 aa13.88□□□□□ -0.19
CCDC88B-201ENST00000301897 TBC1D19Q8N5T2 526 aa13.88□□□□□ -0.19
CCDC88B-201ENST00000301897 ELP5Q8TE02 316 aa13.88□□□□□ -0.19
CCDC88B-201ENST00000301897 SDCCAG3Q96C92 435 aa13.88□□□□□ -0.19
CCDC88B-201ENST00000301897 CCDC138Q96M89 665 aa13.88□□□□□ -0.19
CCDC88B-201ENST00000301897 CDCP1Q9H5V8 836 aa13.88□□□□□ -0.19
CCDC88B-201ENST00000301897 TRIM45Q9H8W5 580 aaPredicted RBP13.88□□□□□ -0.19
CCDC88B-201ENST00000301897 SLC24A3Q9HC58 644 aa13.88□□□□□ -0.19
CCDC88B-201ENST00000301897 LANCL2Q9NS86 450 aa13.88□□□□□ -0.19
CCDC88B-201ENST00000301897 KLF13Q9Y2Y9 288 aaPredicted RBP13.88□□□□□ -0.19
CCDC88B-201ENST00000301897 NAALAD2Q9Y3Q0 740 aa13.88□□□□□ -0.19
CCDC88B-201ENST00000301897 FAM237BA0A1B0GVD1 139 aa13.87□□□□□ -0.19
CCDC88B-201ENST00000301897 OR2W5A6NFC9 320 aa13.87□□□□□ -0.19
CCDC88B-201ENST00000301897 FCHO1O14526 889 aa13.87□□□□□ -0.19
CCDC88B-201ENST00000301897 ADAM10O14672 748 aa13.87□□□□□ -0.19
CCDC88B-201ENST00000301897 STATHP02808 62 aa13.87□□□□□ -0.19
CCDC88B-201ENST00000301897 FHP07954 510 aa13.87□□□□□ -0.19
CCDC88B-201ENST00000301897 TRHRP34981 398 aaPredicted RBP13.87□□□□□ -0.19
CCDC88B-201ENST00000301897 KRTAP10-9P60411 292 aa13.87□□□□□ -0.19
CCDC88B-201ENST00000301897 SNRPNP63162 240 aaKnown RBP13.87□□□□□ -0.19
CCDC88B-201ENST00000301897 CUL1Q13616 776 aa13.87□□□□□ -0.19
CCDC88B-201ENST00000301897 DHX34Q14147 1143 aaKnown RBP13.87□□□□□ -0.19
CCDC88B-201ENST00000301897 CYHR1Q6ZMK1 362 aa13.87□□□□□ -0.19
CCDC88B-201ENST00000301897 SLC26A11Q86WA9 606 aa13.87□□□□□ -0.19
CCDC88B-201ENST00000301897 CHERPQ8IWX8 916 aaKnown RBP13.87□□□□□ -0.19
CCDC88B-201ENST00000301897 PALM2Q8IXS6 379 aa13.87□□□□□ -0.19
CCDC88B-201ENST00000301897 AMER2Q8N7J2 671 aa13.87□□□□□ -0.19
CCDC88B-201ENST00000301897 KCT2Q8NC54 265 aa13.87□□□□□ -0.19
CCDC88B-201ENST00000301897 GIMAP7Q8NHV1 300 aa13.87□□□□□ -0.19
CCDC88B-201ENST00000301897 ZCCHC10Q8TBK6 192 aa13.87□□□□□ -0.19
CCDC88B-201ENST00000301897 CALML6Q8TD86 181 aa13.87□□□□□ -0.19
CCDC88B-201ENST00000301897 TBC1D20Q96BZ9 403 aa13.87□□□□□ -0.19
CCDC88B-201ENST00000301897 PEX11GQ96HA9 241 aa13.87□□□□□ -0.19
CCDC88B-201ENST00000301897 SLC30A3Q99726 388 aa13.87□□□□□ -0.19
CCDC88B-201ENST00000301897 CLK4Q9HAZ1 481 aaKnown RBP13.87□□□□□ -0.19
CCDC88B-201ENST00000301897 HOMER3Q9NSC5 361 aa13.87□□□□□ -0.19
CCDC88B-201ENST00000301897 ASB1Q9Y576 335 aa13.87□□□□□ -0.19
CCDC88B-201ENST00000301897 DNAJC13O75165 2243 aa13.86□□□□□ -0.19
CCDC88B-201ENST00000301897 KLRC4-KLRK1H3BQV0 150 aa13.86□□□□□ -0.19
CCDC88B-201ENST00000301897 TFECO14948 347 aaPredicted RBP13.86□□□□□ -0.19
CCDC88B-201ENST00000301897 MAN1A2O60476 641 aa13.86□□□□□ -0.19
CCDC88B-201ENST00000301897 CDC123O75794 336 aaPredicted RBP13.86□□□□□ -0.19
CCDC88B-201ENST00000301897 C8GP07360 202 aa13.86□□□□□ -0.19
CCDC88B-201ENST00000301897 PTGS2P35354 604 aa13.86□□□□□ -0.19
CCDC88B-201ENST00000301897 RGS4P49798 205 aa13.86□□□□□ -0.19
CCDC88B-201ENST00000301897 HLCSP50747 726 aa13.86□□□□□ -0.19
CCDC88B-201ENST00000301897 PWP1Q13610 501 aa13.86□□□□□ -0.19
CCDC88B-201ENST00000301897 SIX1Q15475 284 aaPredicted RBP13.86□□□□□ -0.19
CCDC88B-201ENST00000301897 UGT3A1Q6NUS8 523 aa13.86□□□□□ -0.19
CCDC88B-201ENST00000301897 PDSS2Q86YH6 399 aa13.86□□□□□ -0.19
CCDC88B-201ENST00000301897 AFAP1L2Q8N4X5 818 aa13.86□□□□□ -0.19
CCDC88B-201ENST00000301897 CPSF7Q8N684 471 aaKnown RBP13.86□□□□□ -0.19
CCDC88B-201ENST00000301897 MFSD9Q8NBP5 474 aa13.86□□□□□ -0.19
CCDC88B-201ENST00000301897 FAM57AQ8TBR7 257 aa13.86□□□□□ -0.19
CCDC88B-201ENST00000301897 CD200R1Q8TD46 325 aa13.86□□□□□ -0.19
CCDC88B-201ENST00000301897 TSLPQ969D9 159 aa13.86□□□□□ -0.19
CCDC88B-201ENST00000301897 GPR21Q99679 349 aa13.86□□□□□ -0.19
CCDC88B-201ENST00000301897 MACROD1Q9BQ69 325 aa13.86□□□□□ -0.19
CCDC88B-201ENST00000301897 DESI2Q9BSY9 194 aa13.86□□□□□ -0.19
CCDC88B-201ENST00000301897 HAUS8Q9BT25 410 aa13.86□□□□□ -0.19
CCDC88B-201ENST00000301897 SARGQ9BW04 601 aa13.86□□□□□ -0.19
CCDC88B-201ENST00000301897 FEZF1A0PJY2 475 aa13.85□□□□□ -0.19
CCDC88B-201ENST00000301897 USP27XA6NNY8 438 aa13.85□□□□□ -0.19
CCDC88B-201ENST00000301897 MLNP12872 115 aa13.85□□□□□ -0.19
CCDC88B-201ENST00000301897 TPP2P29144 1249 aaPredicted RBP13.85□□□□□ -0.19
CCDC88B-201ENST00000301897 CHRNB4P30926 498 aa13.85□□□□□ -0.19
CCDC88B-201ENST00000301897 COILP38432 576 aaPredicted RBP13.85□□□□□ -0.19
CCDC88B-201ENST00000301897 MAGEA6P43360 314 aa13.85□□□□□ -0.19
CCDC88B-201ENST00000301897 MLF1P58340 268 aa13.85□□□□□ -0.19
CCDC88B-201ENST00000301897 HSF1Q00613 529 aa13.85□□□□□ -0.19
CCDC88B-201ENST00000301897 SP140Q13342 867 aa13.85□□□□□ -0.19
CCDC88B-201ENST00000301897 LCTLQ6UWM7 567 aa13.85□□□□□ -0.19
CCDC88B-201ENST00000301897 C3P1Q6ZMU1 363 aa13.85□□□□□ -0.19
CCDC88B-201ENST00000301897 QSOX2Q6ZRP7 698 aa13.85□□□□□ -0.19
CCDC88B-201ENST00000301897 NCCRP1Q6ZVX7 275 aaPredicted RBP13.85□□□□□ -0.19
CCDC88B-201ENST00000301897 STRA8Q7Z7C7 330 aa13.85□□□□□ -0.19
CCDC88B-201ENST00000301897 ARMC10Q8N2F6 343 aa13.85□□□□□ -0.19
CCDC88B-201ENST00000301897 ARMC2Q8NEN0 867 aa13.85□□□□□ -0.19
CCDC88B-201ENST00000301897 RBCK1Q9BYM8 510 aa13.85□□□□□ -0.19
CCDC88B-201ENST00000301897 PARVBQ9HBI1 364 aa13.85□□□□□ -0.19
CCDC88B-201ENST00000301897 XAB2Q9HCS7 855 aaKnown RBP13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms