RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 BOD1L1Q8NFC6 3051 aa12.68□□□□□ -0.38
VPS28-201ENST00000292510 ZNF860A6NHJ4 632 aa12.68□□□□□ -0.38
VPS28-201ENST00000292510 A8MT66 165 aa12.68□□□□□ -0.38
VPS28-201ENST00000292510 C4orf51C9J302 202 aa12.68□□□□□ -0.38
VPS28-201ENST00000292510 E2F3O00716 465 aa12.68□□□□□ -0.38
VPS28-201ENST00000292510 CDH16O75309 829 aa12.68□□□□□ -0.38
VPS28-201ENST00000292510 WFS1O76024 890 aa12.68□□□□□ -0.38
VPS28-201ENST00000292510 NSA2O95478 260 aaKnown RBP12.68□□□□□ -0.38
VPS28-201ENST00000292510 RECKO95980 971 aa12.68□□□□□ -0.38
VPS28-201ENST00000292510 ALBP02768 609 aa12.68□□□□□ -0.38
VPS28-201ENST00000292510 ZNF888P0CJ79 500 aaPredicted RBP12.68□□□□□ -0.38
VPS28-201ENST00000292510 CXCR2P25025 360 aa12.68□□□□□ -0.38
VPS28-201ENST00000292510 AVPR1BP47901 424 aa12.68□□□□□ -0.38
VPS28-201ENST00000292510 RGS1Q08116 209 aa12.68□□□□□ -0.38
VPS28-201ENST00000292510 HYAL2Q12891 473 aa12.68□□□□□ -0.38
VPS28-201ENST00000292510 PWP1Q13610 501 aa12.68□□□□□ -0.38
VPS28-201ENST00000292510 DSG2Q14126 1118 aa12.68□□□□□ -0.38
VPS28-201ENST00000292510 RASA2Q15283 850 aa12.68□□□□□ -0.38
VPS28-201ENST00000292510 VN1R5Q7Z5H4 357 aa12.68□□□□□ -0.38
VPS28-201ENST00000292510 C4orf33Q8N1A6 199 aa12.68□□□□□ -0.38
VPS28-201ENST00000292510 MREGQ8N565 214 aa12.68□□□□□ -0.38
VPS28-201ENST00000292510 NT5CQ8TCD5 201 aa12.68□□□□□ -0.38
VPS28-201ENST00000292510 STT3BQ8TCJ2 826 aa12.68□□□□□ -0.38
VPS28-201ENST00000292510 ZBTB9Q96C00 473 aa12.68□□□□□ -0.38
VPS28-201ENST00000292510 MVB12AQ96EY5 273 aa12.68□□□□□ -0.38
VPS28-201ENST00000292510 NSUN5Q96P11 429 aaKnown RBP12.68□□□□□ -0.38
VPS28-201ENST00000292510 CATSPER2Q96P56 530 aa12.68□□□□□ -0.38
VPS28-201ENST00000292510 EFCAB11Q9BUY7 163 aa12.68□□□□□ -0.38
VPS28-201ENST00000292510 FAM117AQ9C073 453 aa12.68□□□□□ -0.38
VPS28-201ENST00000292510 SLC6A16Q9GZN6 736 aa12.68□□□□□ -0.38
VPS28-201ENST00000292510 SLC26A1Q9H2B4 701 aa12.68□□□□□ -0.38
VPS28-201ENST00000292510 C12orf65Q9H3J6 166 aaKnown RBP12.68□□□□□ -0.38
VPS28-201ENST00000292510 EHD1Q9H4M9 534 aa12.68□□□□□ -0.38
VPS28-201ENST00000292510 HCN3Q9P1Z3 774 aa12.68□□□□□ -0.38
VPS28-201ENST00000292510 COPG2Q9UBF2 871 aa12.68□□□□□ -0.38
VPS28-201ENST00000292510 ZNF282Q9UDV7 671 aaPredicted RBP12.68□□□□□ -0.38
VPS28-201ENST00000292510 EMCNQ9ULC0 261 aa12.68□□□□□ -0.38
VPS28-201ENST00000292510 PLAAQ9Y263 795 aa12.68□□□□□ -0.38
VPS28-201ENST00000292510 NAALAD2Q9Y3Q0 740 aa12.68□□□□□ -0.38
VPS28-201ENST00000292510 TNPO3Q9Y5L0 923 aaKnown RBP12.68□□□□□ -0.38
VPS28-201ENST00000292510 KALRNO60229 2985 aa12.68□□□□□ -0.38
VPS28-201ENST00000292510 PCSK5Q92824 1860 aa12.68□□□□□ -0.38
VPS28-201ENST00000292510 CCDC88CQ9P219 2028 aa12.67□□□□□ -0.38
VPS28-201ENST00000292510 VSTM2BA6NLU5 285 aa12.67□□□□□ -0.38
VPS28-201ENST00000292510 STX16-NPEPL1H3BU86 382 aa12.67□□□□□ -0.38
VPS28-201ENST00000292510 ERVH48-1M5A8F1 160 aa12.67□□□□□ -0.38
VPS28-201ENST00000292510 STX16O14662 325 aa12.67□□□□□ -0.38
VPS28-201ENST00000292510 DNAJB6O75190 326 aa12.67□□□□□ -0.38
VPS28-201ENST00000292510 RDH16O75452 317 aa12.67□□□□□ -0.38
VPS28-201ENST00000292510 KLHL18O94889 574 aa12.67□□□□□ -0.38
VPS28-201ENST00000292510 TBX6O95947 436 aaPredicted RBP12.67□□□□□ -0.38
VPS28-201ENST00000292510 ITGB2P05107 769 aa12.67□□□□□ -0.38
VPS28-201ENST00000292510 ZGLP1P0C6A0 271 aa12.67□□□□□ -0.38
VPS28-201ENST00000292510 FAM87AP0C7U9 286 aa12.67□□□□□ -0.38
VPS28-201ENST00000292510 TSPAN8P19075 237 aa12.67□□□□□ -0.38
VPS28-201ENST00000292510 CASP2P42575 452 aa12.67□□□□□ -0.38
VPS28-201ENST00000292510 RAB8AP61006 207 aa12.67□□□□□ -0.38
VPS28-201ENST00000292510 OLR1P78380 273 aa12.67□□□□□ -0.38
VPS28-201ENST00000292510 OCA2Q04671 838 aa12.67□□□□□ -0.38
VPS28-201ENST00000292510 CHAF1BQ13112 559 aa12.67□□□□□ -0.38
VPS28-201ENST00000292510 ATP1A4Q13733 1029 aa12.67□□□□□ -0.38
VPS28-201ENST00000292510 E2F2Q14209 437 aa12.67□□□□□ -0.38
VPS28-201ENST00000292510 LY6DQ14210 128 aa12.67□□□□□ -0.38
VPS28-201ENST00000292510 TBCCQ15814 346 aa12.67□□□□□ -0.38
VPS28-201ENST00000292510 DEFB134Q4QY38 66 aa12.67□□□□□ -0.38
VPS28-201ENST00000292510 TOR1AIP1Q5JTV8 583 aa12.67□□□□□ -0.38
VPS28-201ENST00000292510 CPZQ66K79 652 aa12.67□□□□□ -0.38
VPS28-201ENST00000292510 BORAQ6PGQ7 559 aa12.67□□□□□ -0.38
VPS28-201ENST00000292510 LAPTM4BQ86VI4 370 aa12.67□□□□□ -0.38
VPS28-201ENST00000292510 MYLK4Q86YV6 388 aaPredicted RBP12.67□□□□□ -0.38
VPS28-201ENST00000292510 RNF175Q8N4F7 328 aa12.67□□□□□ -0.38
VPS28-201ENST00000292510 AFAP1L2Q8N4X5 818 aa12.67□□□□□ -0.38
VPS28-201ENST00000292510 TRPV3Q8NET8 790 aa12.67□□□□□ -0.38
VPS28-201ENST00000292510 UTP15Q8TED0 518 aaKnown RBP12.67□□□□□ -0.38
VPS28-201ENST00000292510 MIEF2Q96C03 454 aa12.67□□□□□ -0.38
VPS28-201ENST00000292510 UBL7Q96S82 380 aaPredicted RBP12.67□□□□□ -0.38
VPS28-201ENST00000292510 MESP1Q9BRJ9 268 aa12.67□□□□□ -0.38
VPS28-201ENST00000292510 NT5DC2Q9H857 520 aa12.67□□□□□ -0.38
VPS28-201ENST00000292510 NOL11Q9H8H0 719 aaKnown RBP12.67□□□□□ -0.38
VPS28-201ENST00000292510 IPPKQ9H8X2 491 aa12.67□□□□□ -0.38
VPS28-201ENST00000292510 WDR54Q9H977 334 aa12.67□□□□□ -0.38
VPS28-201ENST00000292510 ANKHQ9HCJ1 492 aa12.67□□□□□ -0.38
VPS28-201ENST00000292510 RRAGDQ9NQL2 400 aaPredicted RBP12.67□□□□□ -0.38
VPS28-201ENST00000292510 PCTPQ9UKL6 214 aa12.67□□□□□ -0.38
VPS28-201ENST00000292510 TMCO1Q9UM00 188 aa12.67□□□□□ -0.38
VPS28-201ENST00000292510 POLHQ9Y253 713 aa12.67□□□□□ -0.38
VPS28-201ENST00000292510 MAN2B2Q9Y2E5 1009 aa12.67□□□□□ -0.38
VPS28-201ENST00000292510 MAP4K5Q9Y4K4 846 aa12.67□□□□□ -0.38
VPS28-201ENST00000292510 KCNMB2Q9Y691 235 aa12.67□□□□□ -0.38
VPS28-201ENST00000292510 SLC22A7Q9Y694 548 aa12.67□□□□□ -0.38
VPS28-201ENST00000292510 SCN3AQ9NY46 2000 aa12.66□□□□□ -0.38
VPS28-201ENST00000292510 IGLV3-12A0A075B6K2 115 aa12.66□□□□□ -0.38
VPS28-201ENST00000292510 A0A0G2JN53 185 aa12.66□□□□□ -0.38
VPS28-201ENST00000292510 ANKDD1BA6NHY2 528 aa12.66□□□□□ -0.38
VPS28-201ENST00000292510 ARGFXA6NJG6 315 aa12.66□□□□□ -0.38
VPS28-201ENST00000292510 MASP2O00187 686 aa12.66□□□□□ -0.38
VPS28-201ENST00000292510 OR7A17O14581 309 aa12.66□□□□□ -0.38
VPS28-201ENST00000292510 DLX3O60479 287 aa12.66□□□□□ -0.38
VPS28-201ENST00000292510 GALR3O60755 368 aaPredicted RBP12.66□□□□□ -0.38
VPS28-201ENST00000292510 GLRA3O75311 464 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms