RNA–Protein interactions for RNA: ENST00000288976.3

PTPDC1-201, Transcript of protein tyrosine phosphatase domain containing 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPDC1, Length 4,398 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPDC1-201ENST00000288976 CSTF3Q12996 717 aaKnown RBP8.1□□□□□ -1.11
PTPDC1-201ENST00000288976 CPSF6Q16630 551 aaKnown RBP eCLIP8.1□□□□□ -1.11
PTPDC1-201ENST00000288976 SLCO4C1Q6ZQN7 724 aa8.1□□□□□ -1.11
PTPDC1-201ENST00000288976 PLEKHM3Q6ZWE6 761 aa8.1□□□□□ -1.11
PTPDC1-201ENST00000288976 C17orf64Q86WR6 236 aa8.1□□□□□ -1.11
PTPDC1-201ENST00000288976 SPNS2Q8IVW8 549 aa8.1□□□□□ -1.11
PTPDC1-201ENST00000288976 MCEMP1Q8IX19 187 aa8.1□□□□□ -1.11
PTPDC1-201ENST00000288976 ZNF781Q8N8C0 355 aa8.1□□□□□ -1.11
PTPDC1-201ENST00000288976 ACTRT2Q8TDY3 377 aa8.1□□□□□ -1.11
PTPDC1-201ENST00000288976 USP7Q93009 1102 aa8.1□□□□□ -1.11
PTPDC1-201ENST00000288976 NSUN5Q96P11 429 aaKnown RBP8.1□□□□□ -1.11
PTPDC1-201ENST00000288976 SNX6Q9UNH7 406 aa8.1□□□□□ -1.11
PTPDC1-201ENST00000288976 EIF3LQ9Y262 564 aaKnown RBP8.1□□□□□ -1.11
PTPDC1-201ENST00000288976 SLC22A14Q9Y267 594 aa8.1□□□□□ -1.11
PTPDC1-201ENST00000288976 TRAF6Q9Y4K3 522 aa8.1□□□□□ -1.11
PTPDC1-201ENST00000288976 SNX5Q9Y5X3 404 aa8.1□□□□□ -1.11
PTPDC1-201ENST00000288976 R4GN57 208 aa8.1□□□□□ -1.11
PTPDC1-201ENST00000288976 ACACBO00763 2458 aa8.1□□□□□ -1.11
PTPDC1-201ENST00000288976 MN1Q10571 1320 aaPredicted RBP8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 TOX3O15405 576 aaPredicted RBP8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 SEC22BO75396 215 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 UBXN7O94888 489 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 CHRNGP07510 517 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 C1GALT1C1LP0DN25 315 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 CKMT1AP12532 417 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 CCR8P51685 355 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 C1orf61Q13536 156 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 FASTKQ14296 549 aaKnown RBP8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 DEFB133Q30KQ1 61 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 PROX2Q3B8N5 592 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 UGT3A2Q3SY77 523 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 EPGNQ6UW88 154 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 SPATA21Q7Z572 469 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 Q8N9G6 341 aaPredicted RBP8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 NAT6Q93015 286 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 GAL3ST4Q96RP7 486 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 TRIM15Q9C019 465 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 CAAP1Q9H8G2 361 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 ZDHHC2Q9UIJ5 367 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 POMT2Q9UKY4 750 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 CFAP20Q9Y6A4 193 aaKnown RBP8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 CCDC168Q8NDH2 2452 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 A0A088AWK7 358 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 PIPSLA2A3N6 862 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 ZNF195O14628 629 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 HDAC3O15379 428 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 KIF1CO43896 1103 aaKnown RBP8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 GP1BAP07359 652 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 ZNF10P21506 573 aaPredicted RBP8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 MPSTP25325 297 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 TLX1P31314 330 aaPredicted RBP8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 RYKP34925 604 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 PIK3CBP42338 1070 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 XKR7Q5GH72 579 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 WDR74Q6RFH5 385 aaPredicted RBP8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 CYP20A1Q6UW02 462 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 OR4F6Q8NGB9 312 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 SPPL2AQ8TCT8 520 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 ZUFSPQ96AP4 578 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 MRPL1Q9BYD6 325 aaKnown RBP8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 KRT84Q9NSB2 600 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 TMEM45AQ9NWC5 275 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 PLAGL1Q9UM63 463 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 ADAMTS20P59510 1910 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 UNC80Q8N2C7 3258 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 COL6A3P12111 3177 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 LY6G6EA0A0G2JKS1 128 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 A0A0J9YY10 115 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 SLC28A1O00337 649 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 FOXE1O00358 373 aaPredicted RBP8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 C9P02748 559 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 ITGAXP20702 1163 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 PPP2R1BP30154 601 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 PEX19P40855 299 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 ERVPABLB-1P60509 514 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 PRDX1Q06830 199 aaKnown RBP8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 SPESP1Q6UW49 350 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 MINDY1Q8N5J2 469 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 OR2L3Q8NG85 312 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 OR2A1Q8NGT9 310 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 BAHD1Q8TBE0 780 aaPredicted RBP8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 WDR20Q8TBZ3 569 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 RSC1A1Q92681 617 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 CCT8L2Q96SF2 557 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 ATG10Q9H0Y0 220 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 IMPAD1Q9NX62 359 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 KLHL28Q9NXS3 571 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 FBXW2Q9UKT8 454 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 SNX7Q9UNH6 387 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 U3KQA8 63 aa8.09□□□□□ -1.11
PTPDC1-201ENST00000288976 RSL1D1O76021 490 aaKnown RBP8.08□□□□□ -1.12
PTPDC1-201ENST00000288976 CCDC159P0C7I6 412 aa8.08□□□□□ -1.12
PTPDC1-201ENST00000288976 IL10P22301 178 aa8.08□□□□□ -1.12
PTPDC1-201ENST00000288976 GRK6P43250 576 aa8.08□□□□□ -1.12
PTPDC1-201ENST00000288976 HNRNPH2P55795 449 aaKnown RBP8.08□□□□□ -1.12
PTPDC1-201ENST00000288976 LRRC23Q53EV4 343 aaPredicted RBP8.08□□□□□ -1.12
PTPDC1-201ENST00000288976 COLEC12Q5KU26 742 aa8.08□□□□□ -1.12
PTPDC1-201ENST00000288976 ATG14Q6ZNE5 492 aa8.08□□□□□ -1.12
PTPDC1-201ENST00000288976 TRIM46Q7Z4K8 759 aa8.08□□□□□ -1.12
PTPDC1-201ENST00000288976 PRSS42Q7Z5A4 293 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms