RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 ZW10O43264 779 aa9.97□□□□□ -0.81
UPF3B-201ENST00000276201 TBX1O43435 398 aa9.97□□□□□ -0.81
UPF3B-201ENST00000276201 LATS1O95835 1130 aa9.97□□□□□ -0.81
UPF3B-201ENST00000276201 FADS2O95864 444 aaKnown RBP9.97□□□□□ -0.81
UPF3B-201ENST00000276201 RPLP0P05388 317 aaKnown RBP9.97□□□□□ -0.81
UPF3B-201ENST00000276201 TYRP14679 529 aa9.97□□□□□ -0.81
UPF3B-201ENST00000276201 SPNP16150 400 aa9.97□□□□□ -0.81
UPF3B-201ENST00000276201 DRD1P21728 446 aa9.97□□□□□ -0.81
UPF3B-201ENST00000276201 PRPH2P23942 346 aa9.97□□□□□ -0.81
UPF3B-201ENST00000276201 ALDH4A1P30038 563 aa9.97□□□□□ -0.81
UPF3B-201ENST00000276201 SOX11P35716 441 aa9.97□□□□□ -0.81
UPF3B-201ENST00000276201 GGT5P36269 586 aa9.97□□□□□ -0.81
UPF3B-201ENST00000276201 TRPC1P48995 793 aa9.97□□□□□ -0.81
UPF3B-201ENST00000276201 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.97□□□□□ -0.81
UPF3B-201ENST00000276201 GTF2H2Q13888 395 aa9.97□□□□□ -0.81
UPF3B-201ENST00000276201 RFTN2Q52LD8 501 aaPredicted RBP9.97□□□□□ -0.81
UPF3B-201ENST00000276201 CARD16Q5EG05 197 aa9.97□□□□□ -0.81
UPF3B-201ENST00000276201 COLEC12Q5KU26 742 aa9.97□□□□□ -0.81
UPF3B-201ENST00000276201 DDX59Q5T1V6 619 aaKnown RBP eCLIP9.97□□□□□ -0.81
UPF3B-201ENST00000276201 GTF2H2CQ6P1K8 395 aa9.97□□□□□ -0.81
UPF3B-201ENST00000276201 C19orf48Q6RUI8 117 aa9.97□□□□□ -0.81
UPF3B-201ENST00000276201 CCBE1Q6UXH8 406 aaPredicted RBP9.97□□□□□ -0.81
UPF3B-201ENST00000276201 SERPINA11Q86U17 422 aa9.97□□□□□ -0.81
UPF3B-201ENST00000276201 CCDC190Q86UF4 302 aa9.97□□□□□ -0.81
UPF3B-201ENST00000276201 C1orf210Q8IVY1 113 aa9.97□□□□□ -0.81
UPF3B-201ENST00000276201 MAML2Q8IZL2 1156 aaPredicted RBP9.97□□□□□ -0.81
UPF3B-201ENST00000276201 TMEM132CQ8N3T6 1108 aa9.97□□□□□ -0.81
UPF3B-201ENST00000276201 CPXM2Q8N436 756 aa9.97□□□□□ -0.81
UPF3B-201ENST00000276201 PARP16Q8N5Y8 322 aa9.97□□□□□ -0.81
UPF3B-201ENST00000276201 OR4F6Q8NGB9 312 aa9.97□□□□□ -0.81
UPF3B-201ENST00000276201 OR52B6Q8NGF0 335 aa9.97□□□□□ -0.81
UPF3B-201ENST00000276201 NETO1Q8TDF5 533 aa9.97□□□□□ -0.81
UPF3B-201ENST00000276201 BLOC1S5Q8TDH9 187 aa9.97□□□□□ -0.81
UPF3B-201ENST00000276201 HTRA1Q92743 480 aa9.97□□□□□ -0.81
UPF3B-201ENST00000276201 BHMTQ93088 406 aa9.97□□□□□ -0.81
UPF3B-201ENST00000276201 SEMA3CQ99985 751 aa9.97□□□□□ -0.81
UPF3B-201ENST00000276201 RIBC2Q9H4K1 309 aa9.97□□□□□ -0.81
UPF3B-201ENST00000276201 PDFQ9HBH1 243 aa9.97□□□□□ -0.81
UPF3B-201ENST00000276201 RBMX2Q9Y388 322 aaKnown RBP9.97□□□□□ -0.81
UPF3B-201ENST00000276201 PCDHGB6Q9Y5F9 930 aa9.97□□□□□ -0.81
UPF3B-201ENST00000276201 ANTXRLA6NF34 631 aa9.96□□□□□ -0.81
UPF3B-201ENST00000276201 GOLGA8CPA6NN73 597 aa9.96□□□□□ -0.81
UPF3B-201ENST00000276201 CAPN5O15484 640 aaPredicted RBP9.96□□□□□ -0.81
UPF3B-201ENST00000276201 MITFO75030 526 aaPredicted RBP9.96□□□□□ -0.81
UPF3B-201ENST00000276201 UGT2B17O75795 530 aa9.96□□□□□ -0.81
UPF3B-201ENST00000276201 CCNKO75909 580 aa9.96□□□□□ -0.81
UPF3B-201ENST00000276201 ESR1P03372 595 aa9.96□□□□□ -0.81
UPF3B-201ENST00000276201 CXCR2P25025 360 aa9.96□□□□□ -0.81
UPF3B-201ENST00000276201 RPS5P46782 204 aaKnown RBP9.96□□□□□ -0.81
UPF3B-201ENST00000276201 UGT2B15P54855 530 aa9.96□□□□□ -0.81
UPF3B-201ENST00000276201 LSM3P62310 102 aaKnown RBP9.96□□□□□ -0.81
UPF3B-201ENST00000276201 OLR1P78380 273 aa9.96□□□□□ -0.81
UPF3B-201ENST00000276201 IRF3Q14653 427 aa9.96□□□□□ -0.81
UPF3B-201ENST00000276201 EIF4HQ15056 248 aaKnown RBP9.96□□□□□ -0.81
UPF3B-201ENST00000276201 ANGPT1Q15389 498 aa9.96□□□□□ -0.81
UPF3B-201ENST00000276201 PTPRNQ16849 979 aa9.96□□□□□ -0.81
UPF3B-201ENST00000276201 MS4A13Q5J8X5 152 aa9.96□□□□□ -0.81
UPF3B-201ENST00000276201 NADSYN1Q6IA69 706 aa9.96□□□□□ -0.81
UPF3B-201ENST00000276201 VASH1Q7L8A9 365 aaPredicted RBP9.96□□□□□ -0.81
UPF3B-201ENST00000276201 VN1R5Q7Z5H4 357 aa9.96□□□□□ -0.81
UPF3B-201ENST00000276201 STK40Q8N2I9 435 aa9.96□□□□□ -0.81
UPF3B-201ENST00000276201 SYNPOQ8N3V7 929 aa9.96□□□□□ -0.81
UPF3B-201ENST00000276201 OR7G1Q8NGA0 311 aa9.96□□□□□ -0.81
UPF3B-201ENST00000276201 C9orf43Q8TAL5 461 aaPredicted RBP9.96□□□□□ -0.81
UPF3B-201ENST00000276201 APH1BQ8WW43 257 aa9.96□□□□□ -0.81
UPF3B-201ENST00000276201 PYCR2Q96C36 320 aa9.96□□□□□ -0.81
UPF3B-201ENST00000276201 RMDN1Q96DB5 314 aa9.96□□□□□ -0.81
UPF3B-201ENST00000276201 LINGO1Q96FE5 620 aa9.96□□□□□ -0.81
UPF3B-201ENST00000276201 ITCHQ96J02 903 aa9.96□□□□□ -0.81
UPF3B-201ENST00000276201 EPYCQ99645 322 aa9.96□□□□□ -0.81
UPF3B-201ENST00000276201 MGME1Q9BQP7 344 aa9.96□□□□□ -0.81
UPF3B-201ENST00000276201 IER2Q9BTL4 223 aa9.96□□□□□ -0.81
UPF3B-201ENST00000276201 SPATA9Q9BWV2 254 aa9.96□□□□□ -0.81
UPF3B-201ENST00000276201 NDEL1Q9GZM8 345 aa9.96□□□□□ -0.81
UPF3B-201ENST00000276201 SLA2Q9H6Q3 261 aa9.96□□□□□ -0.81
UPF3B-201ENST00000276201 SERHLQ9NQF3 203 aa9.96□□□□□ -0.81
UPF3B-201ENST00000276201 C2orf42Q9NWW7 574 aa9.96□□□□□ -0.81
UPF3B-201ENST00000276201 FBXL12Q9NXK8 326 aa9.96□□□□□ -0.81
UPF3B-201ENST00000276201 UBA6A0AVT1 1052 aaPredicted RBP9.96□□□□□ -0.82
UPF3B-201ENST00000276201 A8MVJ9 347 aa9.96□□□□□ -0.82
UPF3B-201ENST00000276201 K7EQS6 105 aa9.96□□□□□ -0.82
UPF3B-201ENST00000276201 ALX3O95076 343 aa9.96□□□□□ -0.82
UPF3B-201ENST00000276201 KAT7O95251 611 aa9.96□□□□□ -0.82
UPF3B-201ENST00000276201 CDK1P06493 297 aa9.96□□□□□ -0.82
UPF3B-201ENST00000276201 PRPS2P11908 318 aa9.96□□□□□ -0.82
UPF3B-201ENST00000276201 SLC2A4P14672 509 aa9.96□□□□□ -0.82
UPF3B-201ENST00000276201 PTPN6P29350 595 aa9.96□□□□□ -0.82
UPF3B-201ENST00000276201 SLC6A4P31645 630 aa9.96□□□□□ -0.82
UPF3B-201ENST00000276201 LIPAP38571 399 aa9.96□□□□□ -0.82
UPF3B-201ENST00000276201 PIK3CBP42338 1070 aa9.96□□□□□ -0.82
UPF3B-201ENST00000276201 NR4A2P43354 598 aa9.96□□□□□ -0.82
UPF3B-201ENST00000276201 GNPDA1P46926 289 aa9.96□□□□□ -0.82
UPF3B-201ENST00000276201 ITGA1P56199 1179 aa9.96□□□□□ -0.82
UPF3B-201ENST00000276201 CLDN8P56748 225 aa9.96□□□□□ -0.82
UPF3B-201ENST00000276201 ABRAXAS2Q15018 415 aa9.96□□□□□ -0.82
UPF3B-201ENST00000276201 FAM174BQ3ZCQ3 159 aa9.96□□□□□ -0.82
UPF3B-201ENST00000276201 C5orf22Q49AR2 442 aa9.96□□□□□ -0.82
UPF3B-201ENST00000276201 USP39Q53GS9 565 aaKnown RBP9.96□□□□□ -0.82
UPF3B-201ENST00000276201 CTSL3PQ5NE16 218 aa9.96□□□□□ -0.82
UPF3B-201ENST00000276201 ADGRF1Q5T601 910 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms