RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 C2orf80Q0P641 193 aa15.79■□□□□ 0.12
USP4-201ENST00000265560 TRIP10Q15642 601 aa15.79■□□□□ 0.12
USP4-201ENST00000265560 NAGSQ8N159 534 aa15.79■□□□□ 0.12
USP4-201ENST00000265560 SYNPOQ8N3V7 929 aa15.79■□□□□ 0.12
USP4-201ENST00000265560 GLB1L3Q8NCI6 653 aaPredicted RBP15.79■□□□□ 0.12
USP4-201ENST00000265560 ABHD11Q8NFV4 315 aa15.79■□□□□ 0.12
USP4-201ENST00000265560 SLC37A2Q8TED4 501 aa15.79■□□□□ 0.12
USP4-201ENST00000265560 LRGUKQ96M69 825 aa15.79■□□□□ 0.12
USP4-201ENST00000265560 ANKRD27Q96NW4 1050 aa15.79■□□□□ 0.12
USP4-201ENST00000265560 TRNAU1APQ9NX07 287 aaKnown RBP15.79■□□□□ 0.12
USP4-201ENST00000265560 DGKBQ9Y6T7 804 aa15.79■□□□□ 0.12
USP4-201ENST00000265560 PCDH15Q96QU1 1955 aa15.79■□□□□ 0.12
USP4-201ENST00000265560 LRP4O75096 1905 aa15.79■□□□□ 0.12
USP4-201ENST00000265560 TNFRSF10CO14798 259 aa15.79■□□□□ 0.12
USP4-201ENST00000265560 ZNF217O75362 1048 aa15.79■□□□□ 0.12
USP4-201ENST00000265560 PRKRAO75569 313 aaKnown RBP15.79■□□□□ 0.12
USP4-201ENST00000265560 C7P10643 843 aa15.79■□□□□ 0.12
USP4-201ENST00000265560 PRPS1L1P21108 318 aa15.79■□□□□ 0.12
USP4-201ENST00000265560 ALDH9A1P49189 494 aa15.79■□□□□ 0.12
USP4-201ENST00000265560 WNT3P56703 355 aa15.79■□□□□ 0.12
USP4-201ENST00000265560 SMU1Q2TAY7 513 aa15.79■□□□□ 0.12
USP4-201ENST00000265560 COQ5Q5HYK3 327 aa15.79■□□□□ 0.12
USP4-201ENST00000265560 IYDQ6PHW0 289 aa15.79■□□□□ 0.12
USP4-201ENST00000265560 AMIGO2Q86SJ2 522 aa15.79■□□□□ 0.12
USP4-201ENST00000265560 TMEM121BQ9BXQ6 578 aaPredicted RBP15.79■□□□□ 0.12
USP4-201ENST00000265560 AICDAQ9GZX7 198 aa15.79■□□□□ 0.12
USP4-201ENST00000265560 PAIP1Q9H074 479 aaKnown RBP15.79■□□□□ 0.12
USP4-201ENST00000265560 KIR3DX1Q9H7L2 352 aa15.79■□□□□ 0.12
USP4-201ENST00000265560 APOBEC3BQ9UH17 382 aaKnown RBP15.79■□□□□ 0.12
USP4-201ENST00000265560 CEP192Q8TEP8 1941 aa15.78■□□□□ 0.12
USP4-201ENST00000265560 VIPP01282 170 aa15.78■□□□□ 0.12
USP4-201ENST00000265560 IL3P08700 152 aa15.78■□□□□ 0.12
USP4-201ENST00000265560 MAGP20916 626 aa15.78■□□□□ 0.12
USP4-201ENST00000265560 HSD17B2P37059 387 aa15.78■□□□□ 0.12
USP4-201ENST00000265560 PPM1FP49593 454 aaPredicted RBP15.78■□□□□ 0.12
USP4-201ENST00000265560 SPIN4Q56A73 249 aa15.78■□□□□ 0.12
USP4-201ENST00000265560 ADGRF3Q8IZF5 1079 aa15.78■□□□□ 0.12
USP4-201ENST00000265560 TMEM132CQ8N3T6 1108 aa15.78■□□□□ 0.12
USP4-201ENST00000265560 PKP2Q99959 881 aa15.78■□□□□ 0.12
USP4-201ENST00000265560 CPNE7Q9UBL6 633 aa15.78■□□□□ 0.12
USP4-201ENST00000265560 FOXE1O00358 373 aaPredicted RBP15.78■□□□□ 0.12
USP4-201ENST00000265560 RAB8AP61006 207 aa15.78■□□□□ 0.12
USP4-201ENST00000265560 SRSF5Q13243 272 aaKnown RBP15.78■□□□□ 0.12
USP4-201ENST00000265560 LAPTM5Q13571 262 aa15.78■□□□□ 0.12
USP4-201ENST00000265560 CCNYL2Q5T2Q4 361 aa15.78■□□□□ 0.12
USP4-201ENST00000265560 CPTPQ5TA50 214 aa15.78■□□□□ 0.12
USP4-201ENST00000265560 SHISA5Q8N114 240 aa15.78■□□□□ 0.12
USP4-201ENST00000265560 JADE3Q92613 823 aa15.78■□□□□ 0.12
USP4-201ENST00000265560 SLCO4A1Q96BD0 722 aa15.78■□□□□ 0.12
USP4-201ENST00000265560 SEPHS2Q99611 448 aa15.78■□□□□ 0.12
USP4-201ENST00000265560 ANGPTL2Q9UKU9 493 aa15.78■□□□□ 0.12
USP4-201ENST00000265560 CACNA1EQ15878 2313 aa15.78■□□□□ 0.12
USP4-201ENST00000265560 TECTAO75443 2155 aa15.78■□□□□ 0.12
USP4-201ENST00000265560 RP1P56715 2156 aa15.77■□□□□ 0.12
USP4-201ENST00000265560 FAM149AA5PLN7 773 aa15.77■□□□□ 0.12
USP4-201ENST00000265560 GLOD5A6NK44 160 aa15.77■□□□□ 0.12
USP4-201ENST00000265560 C4orf51C9J302 202 aa15.77■□□□□ 0.12
USP4-201ENST00000265560 PRICKLE3O43900 615 aaPredicted RBP15.77■□□□□ 0.12
USP4-201ENST00000265560 HSD3B1P14060 373 aa15.77■□□□□ 0.12
USP4-201ENST00000265560 PTX3P26022 381 aaPredicted RBP15.77■□□□□ 0.12
USP4-201ENST00000265560 HSD3B2P26439 372 aa15.77■□□□□ 0.12
USP4-201ENST00000265560 TPP2P29144 1249 aaPredicted RBP15.77■□□□□ 0.12
USP4-201ENST00000265560 KHDRBS2Q5VWX1 349 aaKnown RBP15.77■□□□□ 0.12
USP4-201ENST00000265560 SLC9B2Q86UD5 537 aa15.77■□□□□ 0.12
USP4-201ENST00000265560 C16orf78Q8WTQ4 265 aa15.77■□□□□ 0.12
USP4-201ENST00000265560 LRTOMTQ8WZ04 291 aa15.77■□□□□ 0.12
USP4-201ENST00000265560 FIG4Q92562 907 aa15.77■□□□□ 0.12
USP4-201ENST00000265560 ZNF583Q96ND8 569 aa15.77■□□□□ 0.12
USP4-201ENST00000265560 DUSP26Q9BV47 211 aa15.77■□□□□ 0.12
USP4-201ENST00000265560 LRRC61Q9BV99 259 aa15.77■□□□□ 0.12
USP4-201ENST00000265560 WASH6PQ9NQA3 447 aa15.77■□□□□ 0.12
USP4-201ENST00000265560 EML5Q05BV3 1969 aa15.77■□□□□ 0.12
USP4-201ENST00000265560 GPR179Q6PRD1 2367 aa15.77■□□□□ 0.12
USP4-201ENST00000265560 METTL12A8MUP2 240 aa15.77■□□□□ 0.11
USP4-201ENST00000265560 SCAMP2O15127 329 aaKnown RBP15.77■□□□□ 0.11
USP4-201ENST00000265560 NDUFS4O43181 175 aa15.77■□□□□ 0.11
USP4-201ENST00000265560 TIPRLO75663 272 aa15.77■□□□□ 0.11
USP4-201ENST00000265560 CLNS1AP54105 237 aaKnown RBP15.77■□□□□ 0.11
USP4-201ENST00000265560 MAZP56270 477 aaKnown RBP15.77■□□□□ 0.11
USP4-201ENST00000265560 C16orf72Q14CZ0 275 aa15.77■□□□□ 0.11
USP4-201ENST00000265560 DEPDC1Q5TB30 811 aa15.77■□□□□ 0.11
USP4-201ENST00000265560 PRMT9Q6P2P2 845 aa15.77■□□□□ 0.11
USP4-201ENST00000265560 GALNT10Q86SR1 603 aa15.77■□□□□ 0.11
USP4-201ENST00000265560 DTWD1Q8N5C7 304 aa15.77■□□□□ 0.11
USP4-201ENST00000265560 MS4A8Q9BY19 250 aa15.77■□□□□ 0.11
USP4-201ENST00000265560 PCBD2Q9H0N5 130 aa15.77■□□□□ 0.11
USP4-201ENST00000265560 C15orf41Q9Y2V0 281 aa15.77■□□□□ 0.11
USP4-201ENST00000265560 SERTM1A2A2V5 107 aa15.77■□□□□ 0.11
USP4-201ENST00000265560 KCNJ13O60928 360 aa15.77■□□□□ 0.11
USP4-201ENST00000265560 C9P02748 559 aa15.77■□□□□ 0.11
USP4-201ENST00000265560 CD38P28907 300 aa15.77■□□□□ 0.11
USP4-201ENST00000265560 PIK3CBP42338 1070 aa15.77■□□□□ 0.11
USP4-201ENST00000265560 REEP5Q00765 189 aa15.77■□□□□ 0.11
USP4-201ENST00000265560 ZNF763Q0D2J5 394 aa15.77■□□□□ 0.11
USP4-201ENST00000265560 PRPF38BQ5VTL8 546 aaKnown RBP15.77■□□□□ 0.11
USP4-201ENST00000265560 ANGPTL8Q6UXH0 198 aa15.77■□□□□ 0.11
USP4-201ENST00000265560 ZNF551Q7Z340 670 aaPredicted RBP15.77■□□□□ 0.11
USP4-201ENST00000265560 METTL4Q8N3J2 472 aa15.77■□□□□ 0.11
USP4-201ENST00000265560 SPEM1Q8N4L4 309 aa15.77■□□□□ 0.11
USP4-201ENST00000265560 GPBAR1Q8TDU6 330 aa15.77■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms