RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 IL7RP16871 459 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 RPL9P32969 192 aaKnown RBP4.54□□□□□ -1.68
SCN1A-220ENST00000641603 AP1S1P61966 158 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 DUOXA1Q1HG43 343 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 CD163Q86VB7 1156 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 CADM3Q8N126 398 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 VGLL2Q8N8G2 317 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 C7orf57Q8NEG2 295 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 LHFPL5Q8TAF8 219 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 CPVLQ9H3G5 476 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 PCDHB5Q9Y5E4 795 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 C5orf51A6NDU8 294 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 ARNTLO00327 626 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 ACSL4O60488 711 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 H1F0P07305 194 aaKnown RBP4.54□□□□□ -1.68
SCN1A-220ENST00000641603 ERCC1P07992 297 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-220ENST00000641603 RHOCP08134 193 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 CDK2P24941 298 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 GTF2E2P29084 291 aaKnown RBP4.54□□□□□ -1.68
SCN1A-220ENST00000641603 CRYZQ08257 329 aaKnown RBP4.54□□□□□ -1.68
SCN1A-220ENST00000641603 RAB40BQ12829 278 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 VEZF1Q14119 521 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 BCL2A1Q16548 175 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 ENPP7Q6UWV6 458 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 BEND4Q6ZU67 534 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 ARL6IP6Q8N6S5 226 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 LFNGQ8NES3 379 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 FAM151AQ8WW52 585 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 SEMA4DQ92854 862 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 DUSP26Q9BV47 211 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 MRTO4Q9UKD2 239 aaKnown RBP4.54□□□□□ -1.68
SCN1A-220ENST00000641603 FAM50BQ9Y247 325 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 LATO43561 262 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 HTR3BO95264 441 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 RPL7AP62424 266 aaKnown RBP4.53□□□□□ -1.68
SCN1A-220ENST00000641603 FAM174BQ3ZCQ3 159 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 ZC3HC1Q86WB0 502 aaKnown RBP4.53□□□□□ -1.68
SCN1A-220ENST00000641603 TM9SF4Q92544 642 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 PTCHD1Q96NR3 888 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 EFCAB11Q9BUY7 163 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 SYT4Q9H2B2 425 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 HRH3Q9Y5N1 445 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 GIPP09681 153 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-220ENST00000641603 IL1RNP18510 177 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 HDCP19113 662 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 GCAP28676 217 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 LTKP29376 864 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 SEMA3BQ13214 749 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 TSTD2Q5T7W7 516 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 FKBP1CQ5VVH2 108 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 SLC27A1Q6PCB7 646 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 TIPARPQ7Z3E1 657 aaKnown RBP4.53□□□□□ -1.68
SCN1A-220ENST00000641603 LYSMD2Q8IV50 215 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 KLHDC8BQ8IXV7 354 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 COMMD1Q8N668 190 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 SAMD12Q8N8I0 201 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 OR2L2Q8NH16 312 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 TMEM203Q969S6 136 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 MCMBPQ9BTE3 642 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 HMX1Q9NP08 348 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-220ENST00000641603 PRAMEF22A3QJZ6 481 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 J3QR89 54 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 ACOT7O00154 380 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 DLX3O60479 287 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 FGF4P08620 206 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 CD48P09326 243 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 FAM86B2P0C5J1 330 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 HPGDP15428 266 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 MSX2P35548 267 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-220ENST00000641603 TBX4P57082 545 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 RAB1AP62820 205 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 MRPS5P82675 430 aaKnown RBP4.53□□□□□ -1.68
SCN1A-220ENST00000641603 PGM5Q15124 567 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 FCRLBQ6BAA4 426 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 CAPN13Q6MZZ7 669 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-220ENST00000641603 SLC43A2Q8N370 569 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 GPR151Q8TDV0 419 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 CHTF18Q8WVB6 975 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 ELMOD3Q96FG2 381 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 ZNF419Q96HQ0 510 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-220ENST00000641603 TMEM27Q9HBJ8 222 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 WDR70Q9NW82 654 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 PPIEQ9UNP9 301 aaKnown RBP4.53□□□□□ -1.68
SCN1A-220ENST00000641603 PCDHB11Q9Y5F2 797 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 PPP1R2P9O14990 202 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 SLC16A6O15403 523 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 SDC3O75056 442 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 SMIM18P0DKX4 95 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 SNHG28P0DPA3 235 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 IGFALSP35858 605 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 DPP9Q86TI2 863 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 SLC15A3Q8IY34 581 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 ADGRG2Q8IZP9 1017 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 BEST3Q8N1M1 668 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 PCDH19Q8TAB3 1148 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 RAB39BQ96DA2 213 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 RRNAD1Q96FB5 475 aaKnown RBP4.53□□□□□ -1.68
SCN1A-220ENST00000641603 C14orf166Q9Y224 244 aaKnown RBP4.53□□□□□ -1.68
SCN1A-220ENST00000641603 LCHNA4D1U4 455 aa4.53□□□□□ -1.68
SCN1A-220ENST00000641603 SOCS2O14508 198 aa4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms