RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 DRAXINQ8NBI3 349 aaPredicted RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 TMEM203Q969S6 136 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 FAM136AQ96C01 138 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 CCDC106Q9BWC9 280 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 FXYD6Q9H0Q3 95 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 MYNNQ9NPC7 610 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 OR12D3Q9UGF7 316 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 ADAMTS1Q9UHI8 967 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 AP1M2Q9Y6Q5 423 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 KIF1AQ12756 1690 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 PNMA6EA0A0J9YXQ4 647 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 DISC1C4P0D8 188 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 CRYABP02511 175 aaKnown RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 HLA-EP13747 358 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 ETS1P14921 441 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 KLRK1P26718 216 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 ALDH4A1P30038 563 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 PRKAR1BP31321 381 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 PTPN7P35236 360 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 CCNFP41002 786 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 SLC5A3P53794 718 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 DAOAP59103 153 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 DHCR24Q15392 516 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 RNASE10Q5GAN6 216 aaKnown RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 AKR1C8PQ5T2L2 129 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 KIAA0930Q6ICG6 404 aaPredicted RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 PET117Q6UWS5 81 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 USP43Q70EL4 1123 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 APTXQ7Z2E3 356 aaKnown RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 GPR180Q86V85 440 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 SLC9A9Q8IVB4 645 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 CA5BP1Q8WTZ4 195 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 COPS5Q92905 334 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 RAB7BQ96AH8 199 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 HSPA12BQ96MM6 686 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 RNF145Q96MT1 663 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 DIRC2Q96SL1 478 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 TSNAXQ99598 290 aaKnown RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 PIGQQ9BRB3 760 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 MECRQ9BV79 373 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 ERVK-18Q9QC07 812 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 SARDHQ9UL12 918 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 RAPGEF6Q8TEU7 1601 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 LOC105369274A0A096LPK9 316 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF705GA8MUZ8 300 aaPredicted RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 MASP2O00187 686 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 DCLK1O15075 740 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 SEC14L2O76054 403 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 LATS1O95835 1130 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 SCGB1D1O95968 90 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 RENP00797 406 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 GH2P01242 217 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 CYP1A2P05177 515 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 GNB3P16520 340 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 HMGCS2P54868 508 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 PDGFRLQ15198 375 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 FAM110CQ1W6H9 321 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 FBXO47Q5MNV8 452 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 DCST2Q5T1A1 773 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 GGNBP1Q5YKI7 109 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 NOXRED1Q6NXP6 359 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 TFAP2DQ7Z6R9 452 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 TPRA1Q86W33 373 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 LAS2Q8IYD9 372 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 OR4N4Q8N0Y3 316 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 SLC5A8Q8N695 610 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 FAM71DQ8N9W8 422 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 SPPL2BQ8TCT7 592 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 HAVCR2Q8TDQ0 301 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 NKD2Q969F2 451 aaPredicted RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 SLAMF9Q96A28 289 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 SNX27Q96L92 541 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF583Q96ND8 569 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 ZCCHC3Q9NUD5 404 aaKnown RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 TP53TG5Q9Y2B4 290 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 PCDHGA1Q9Y5H4 931 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 RIMBP3CA6NJZ7 1639 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 RIMBP3BA6NNM3 1639 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 RIMBP3Q9UFD9 1639 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF705FA8MVS1 300 aaPredicted RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 B4DGG1 531 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 TULP2O00295 520 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 MSTNO14793 375 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 TAF5LO75529 589 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 DBHP09172 617 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF705DP0CH99 300 aaPredicted RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF705BP0CI00 300 aaPredicted RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 EPHA1P21709 976 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 IL32P24001 234 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 MSX2P35548 267 aaPredicted RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 IDH2P48735 452 aaKnown RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 S100A10P60903 97 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 PTPN11Q06124 597 aaPredicted RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 GRK1Q15835 563 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 ATP6AP1Q15904 470 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 COL28A1Q2UY09 1125 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 ZIK1Q3SY52 487 aaPredicted RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 CES4AQ5XG92 561 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 SLC39A4Q6P5W5 647 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF100Q8IYN0 542 aa2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms